Construct: ORF TRCN0000477618
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013160.1_s317c1
- Derived from:
- ccsbBroadEn_08024
- DNA Barcode:
- CTCCCTACTAATGTGGTGTGTCCA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- OR11A1 (26531)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477618
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26531 | OR11A1 | olfactory receptor family 1... | NM_013937.3 | 99.6% | 55.8% | 220C>T;493G>A;531_532insT |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 609
- ORF length:
- 540
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggaaattgtc tccacaggaa acgaaactat tactgaattt gtcctccttg 121 gcttctatga catccctgaa ctgcatttct tgttttttat tgtattcact gctgtctatg 181 tcttcatcat catagggaat atgctgatta ttgtagcagt ggttagctcc cagaggctcc 241 acaaacccat gtatattttc ttggcgaatc tgtccttcct ggatattttc tacacctccg 301 cagtgatgcc aaaaatgctg gagggcttcc tgcaagaagc aactatctct gtggctggtt 361 gcttgctcca gttctttatc ttcggctctc tagccacagc tgaatgctta ctgctggctg 421 tcatggcata tgaccgctac ctggcaattt gctacccact ccactaccca ctcctgatgg 481 ggcccagacg gtacatgggg ctggtggtca caacctggct ctctggattt gtggtagatg 541 gactggttgt ggcccTGGTG ACCCAGCTGA GGTTCTGTGG CCCCAACCAC ATTGACCAGT 601 TTTTACTGTG ACTTTATGCT TTTCGTGGGC CTGGCTTGCT CGGATCCCAG AGTGGCTCAG 661 GTGACAACTC TCATTCTGTC TGTGTTCTGC CTCACTATTC CTTTTGGACT GATTCTGACA 721 TCTTATGCCA GAATTGTGGT GGCAGTGCTG AGAGTTCCTG CTGGGGCAAG CAGGAGAAGG 781 GCTTTCTCCA CATGCTCCTC CCACCTAGCT GTAGTGACCA CATTCTATGG AACGCTCATG 841 ATCTTTTATG TTGCACCCTC TGCTGTCCAT TCCCAGCTCC TCTCCAAGGT CTTCTCCCTG 901 CTCTACACTG TGGTCACCCC TCTCTTCAAT CCTGTGATCT ATACCATGAG GAACAAGGAG 961 GTGCATCAGG CACTTCGGAA GATTCTCTGT ATCAAACAAA CTGAAACACT TGATTTGCCA 1021 ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC 1081 GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT 1141 ATATCTTGTG GAAAGGACGA CTCCCTACTA ATGTGGTGTG TCCAACGCGT TAAGTCgaca 1201 atcaacctct ggattacaaa atttgtgaaa gatt