Construct: ORF TRCN0000477696

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007436.1_s317c1
Derived from:
ccsbBroadEn_14475
DNA Barcode:
TACAGTTTACTCATAATTACGAAT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
ZNF678 (339500)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477696
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 339500 ZNF678 zinc finger protein 678 NM_001367909.1 99.1% 25.5% (many diffs)
2 human 339500 ZNF678 zinc finger protein 678 NM_001367910.1 99.1% 25.5% (many diffs)
3 human 339500 ZNF678 zinc finger protein 678 NM_001367911.1 92% 19.6% (many diffs)
4 human 339500 ZNF678 zinc finger protein 678 NM_178549.4 87.2% 18.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
471
ORF length:
405
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg cacaatatca ctttgcattg gtgtctgtgc atttgaagga gcaaacacct
121ctaccagttt ttataaactg gtttatacag ctattttatc ttattccatt caagaccttt
181tgccagagca ggatatgaaa gatttatgcc aaaaagtgac actgacaaga catagaagct
241ggggccttga caatttgcac ttagtgaaag actggagaac tgtgaatgaa ggtaaggggc
301agaaagaata ttgcaataga cttactcaat gttcatcaac taaaagcaaa atctttcaat
361gtattgaatg tggcagaaat tttagctgga ggtcaatcct tactgaacat aagagaattc
421atactggaga gaagccatac aaatgtgaag aatgtggcaa agtctttcaa tagatgtttc
481caaacctaac aaaacatgaa aggaattcat actggagaga aaccntacaa atgtgacgaa
541tgtggcaaag tttttaattg gtggtcacaa ctaactaacc ataagaaaat tcatactgga
601gagaaaccct acaaatgtga tgaatgtgac aaagttttta attggtggtc acaactaact
661agccataagn aaattcatag tggagagaaa ccatacccat gtgaagaatg tggcaaagcc
721tttacccagt tctcaancct tactgaacat aagagaattc atactggaga gaaaccctac
781aaatgcaaag aatgttgcaa agcctttaac aagttctcaa accttactca acataagaga
841attcatactg gagagaaacc ttacaagtgt gaagaatgtg gcaacgtttt taatgagtgc
901tcacacctaa ctagacatag gagaattcat actggagaga aaccctacaa atgtgaagaa
961tgtggcaaag cctttacaca gtttgcaagc cttactcgtc ataaaagaat tcatactgga
1021gaaaaaccct accaatgtga agaatgtggc aaaactttta atcggtgttc acacctaagt
1081agccataaga gaattcatac tggagagaaa ccctacaaat gtgaagaatg tggcagaacc
1141tttactcaat tctcaaacct cactcagcat aaaagaattc atactggaga gaaaccctac
1201aaatgcaaag aatgtggcaa agcgtttaac aagttctcaa gccttactca acataggaga
1261attcatactg gagtgaaaac ccTACAAATG TGAAGAATGT GGGAAAGTTT TTAAACAGTG
1321CTCTCACCTA ACTAGCCATA AGAGAATTCA TACTGGAGAG AAACCCTACA AATGTAAAGA
1381ATGTGGCAAA GCTTTTTACC AATCCTCAAT CCTTAGTAAG CATAAGAGAA TTCATACTGA
1441AGAGAAACCC TACAAATGTG AAGAATGTGG CAAAGCCTTT AACCAGTTCT CAAGCCTTAC
1501TCGTCATAAA AGAATTCATA CTGGAGAGAA ACGCTACAAA TGTAAAGAAT GTGGAAAAGG
1561TTTTTACCAA TCCTCAATCC ATAGTAAGTA TAAGAGAATT TATACTGGAG AGGAACCTGA
1621CAAATGTAAA AATGTGGCAG TCTTTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT
1681AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA
1741CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TACAGTTTAC
1801TCATAATTAC GAATACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa
1861gatt

Download FASTA (ORF) (Full)