Construct: ORF TRCN0000477750

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015006.1_s317c1
Derived from:
ccsbBroadEn_08196
DNA Barcode:
TACAGGATTATCATGGATCCATTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HDDC2 (51020)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477750
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51020 HDDC2 HD domain containing 2 NM_016063.3 99.8% 99.5% 392A>G
2 human 51020 HDDC2 HD domain containing 2 XM_024446450.1 75.8% 75.4% 0_1ins147;245A>G
3 human 51020 HDDC2 HD domain containing 2 XR_245538.4 44.2% (many diffs)
4 mouse 69692 Hddc2 HD domain containing 2 NM_027168.2 84.5% 86.2% (many diffs)
5 mouse 69692 Hddc2 HD domain containing 2 XM_006512836.3 53.1% 53.3% (many diffs)
6 mouse 69692 Hddc2 HD domain containing 2 XR_380073.3 41.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
681
ORF length:
612
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcttcggtc tcctctgcga ccttctcggg ccacggggct cggtccctac
121tgcagttcct gcggctggta gggcagctca agagagtccc acgaactggc tgggtataca
181gaaatgtcca gaggccggag agcgtttcag atcacatgta ccggatggca gttatggcta
241tggtgatcaa agatgaccgt cttaacaaag accgatgtgt acgcctagcc ctggttcatg
301atatggcaga atgcatcgtt ggggacatag caccagcaga taacatcccc aaagaagaaa
361aacataggcg agaagaggaa gctatgaagc agataaccca gctcctacca gaggacctca
421gaaaggagct ctatgaactt tgggaagagt acgagacccg atcTAGTGCA GAAGCCAAAT
481TTGTGAAGCA GCTAGACCAA TGTGAAATGA TTCTTCAAGC ATCTGAATAT GAAGACCTTG
541AACACAAACC TGGGAGACTG CAAGACTTCT ATGATTCCAC AGCAGGAAAA TTCAATCACC
601CTGAGATAGT CCAGCTTGTT TCTGAACTTG AGGCAGAAAG AAGCACTAAC ATAGCTGCAG
661CTGCCAGTGA GCCACACTCC TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
721CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
781AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATACA GGATTATCAT
841GGATCCATTA ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)