Construct: ORF TRCN0000477857

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003144.1_s317c1
Derived from:
ccsbBroadEn_13274
DNA Barcode:
TCCGGTGGTTTGAGCGACAGGCCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCNYL1 (151195)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477857
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 151195 CCNYL1 cyclin Y like 1 NM_152523.2 82.3% 79.2% 121_221del;258_309del
2 human 151195 CCNYL1 cyclin Y like 1 NM_001142300.1 77.2% 77.2% 1_210del
3 human 151195 CCNYL1 cyclin Y like 1 NM_001330218.1 66.2% 63.7% 1_210del;331_431del;468_519del
4 human 641367 LOC641367 cyclin Y like 1 pseudogene NR_024523.1 25.1% (many diffs)
5 mouse 227210 Ccnyl1 cyclin Y-like 1 NM_001097644.1 77% 78% (many diffs)
6 mouse 227210 Ccnyl1 cyclin Y-like 1 XM_006495953.3 71.6% 75.3% (many diffs)
7 mouse 227210 Ccnyl1 cyclin Y-like 1 XM_011238499.2 52.9% 53.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
783
ORF length:
714
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcccgaagat ttagctttgg agtcaaaccc ttctgaccat ccaagggcaa
121gcacaatttt cctgagcaaa tctcaaacgg atgtgcgaga aaagaggaag agcaaccatt
181tgaaccattg tgaccttagc aatatattac cacataaaga acagcgagaa aaagttccag
241aggaatactt taagcatgat cctgagcaca aatttattta cagatttgtt cgtactcttt
301ttagtgctgc acagctaaca gctgaatgtg caatagtaac tttggtttac ttagaaaggc
361ttttAACTTA TGCTGAAATC GACATTTGTC CCACCAACTG GAAAAGGATT GTTCTGGGAG
421CCATTCTTCT TGCCTCCAAG GTTTGGGACG ATCAGGCTGT ATGGAATGTG GACTACTGCC
481AGATCCTCAA GGACATTACA GTTGAGGACA TGAATGAAAT GGAAAGGCAT TTTCTGGAGC
541TTCTTCAGTT TAATATTAAT GTTCCTGCCA GTGTTTATGC CAAATACTAC TTTGACCTTC
601GCTCCTTAGC AGATGACAAC AACCTGAATT TTCTATTTGC TCCTCTTAGC AAAGAAAGAG
661CACAGAACCT AGAGGCTATT TCTAGATTGT GTGAAGACAA AGACTTGTGT AGAGCCGCTA
721TGAGAAGGTC TTTCAGTGCT GATAACTTCA TTGGTATTCA GCGCTCTAAA GCCATCCTCT
781CTTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
841TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
901GGCTTTATAT ATCTTGTGGA AAGGACGATC CGGTGGTTTG AGCGACAGGC CAACGCGTTA
961AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)