Construct: ORF TRCN0000477971
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003584.1_s317c1
- Derived from:
- ccsbBroadEn_15056
- DNA Barcode:
- TAGAGTCTTGCCATAGGTCGCGAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GALNT9 (50614)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477971
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 50614 | GALNT9 | polypeptide N-acetylgalacto... | NM_001122636.2 | 71.1% | 63.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1416
- ORF length:
- 1347
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcggtggcc aggaagatcc gaactttgct gacggtgaac atcctggtgt 121 tcgtgggcat cgtcctgttc tccgtgtact gccgcctgca gggccgctcc caggagctcg 181 tgcgcatcgt gagcggcgac cgccgggtgc gcagccgaca cgccaaggtg ggcacgctgg 241 gggaccgtga ggccatcctg cagcgcctgg accacctgga ggaggtggtc tacaaccagc 301 tcaacggcct tgccaagccc atcggcctgg tggaggggcc aggaggcctg ggccagggtg 361 gcttggcggc caccctgcgt gatgacggcc aggaggcgga aggcaagtat gaggagtacg 421 gctacaacgc tcagctcagc gaccgcatct ccctcgatcg gagcatcccc gactaccggc 481 ccagaaagtg cagacagatg agctacgccc aggacctgcc ccaggtctcc gtggtcttca 541 tcttcgtcaa tgaggcgctg tcggtcatcc tgcgctccgt gcacagcgtg gtcaaccaca 601 cgccctccca gctcctcaag gaggtcatcc tggtggacga caacagtgac aacgtggaac 661 tcaagttcaa tctggaccag tacgtcaaca agcggtaccc aggcctcgtg aagantgtcc 721 gcaacagccg gcgggaagga ctgatccgcg cgcggctgca gggctggaag gcggccaccg 781 ccccagtcgt cggcttcttt gatgcccacg tcgagttcaa cacgggctgg gccgagcccg 841 cactgtcgcg gatccgagag gaccggcgtc gcatcgtgct gccagccatc gacaacatca 901 agtacagcac gtttgaggtg cagcagtatg cgaacgccgc ccatggctac aactggggcc 961 tctggtgcat gtacatcatc cccccgcagg actggctgga ccgcggcgac gagtcagcac 1021 ccatcaggac cccagccatg atcggctgct ccttcgtagt ggaccgcgag tacttcggag 1081 acattgggct gctggacccc ggcatggagg tgtatggcgg cgagaacgta gaactgggca 1141 tgagggtgag tgcggccccg gtgtccaggg acagggtgag ggcgagtgag gccacagcgt 1201 ctgggaacag gatgagggcg agtgaggccg cggtgtccgg ggacggggtg agggcgagtg 1261 tggctgCAGC GTCCGGGGAT GGGGTGAGGG CGAGTGCGGC CACGGCATCT GGGGACGGGG 1321 TGAGGGCGAG TGAGGCCGCG GTGTCTGGGG ACGGGGTGAG GGCGAGTGCG GCCACGGCAT 1381 CCGGGGACGG GGTGAGGGCG AGTGCAGCCA TGGTCTTGCC AACTTTCTTG TACAAAGTGG 1441 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 1501 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 1561 ATAGAGTCTT GCCATAGGTC GCGAGACGCG TTAAGTCgac aatcaacctc tggattacaa 1621 aatttgtgaa agatt