Construct: ORF TRCN0000478075

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006891.1_s317c1
Derived from:
ccsbBroadEn_11774
DNA Barcode:
GAAAGACCATGCATAGAACGCAAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABTB2 (25841)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478075
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25841 ABTB2 ankyrin repeat and BTB doma... NM_145804.3 81.8% 81.8% 1_558del
2 mouse 99382 Abtb2 ankyrin repeat and BTB (POZ... NM_178890.3 73.2% 79.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2586
ORF length:
2517
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gagcgccggc gacgggctgc gccggggcaa gtccgcgcgc tgcggcctca
121ccttctcagt gggtcgcttt ttccgctgga tggtggacac ccgaatctcc gtgcgcatcc
181acgagtacgc agccatctcc ctcaccgcct gcatggagaa cctggtggag gagatccggg
241ccagggtgat ggccagccac agccctgatg gcggaggggc cggaggcggg gaggtgtctg
301ctgaggccct ggagatggtc atcaacaacg acgccgagct ctggggcgtc ttgcagccct
361atgagcatct catctgcggc aagaacgcca atggtgtcct ctccctcccc gcatacttca
421gcccctacaa cggcgggtcc ctgggccatg acgagcgagc cgatgcctat gcccagctgg
481agctccgaac cctggagcag tccctcctgg ccacctgcgt gggcagcatc tcggagctga
541gtgacttggt ctcccgtgcc atgcaccaca tgcaggggcg tcaccccctg tgcccgggtg
601ccagccctgc ccgccaggcc cgccagccgc cacagcccat cacttggtcc cccgacgccc
661tccacacgct ctactacttt ctgcggtgtc cacagatgga gtccatggag aaccccaacc
721tggacccccc gagaatgacc ttgaacaatg aacggccctt catgctgctg ccgcccctca
781tggagtggat gcgcgtggcc atcacctacg cagagcaccg ccgcagcctc accgtggaca
841gcggcgacat ccggcaggca gcccggctgc tgctgcctgg tctggactgt gaacctcggc
901agctcaaacc cgaacactgt ttcagttcct tccggaggct ggatgcccga gcagctactg
961aaaaattcaa ccaggacctg ggtttccgca tgctcaactg tgggaggacg gacctcatca
1021accaagccat cgaggccttg ggtccggatg gggttaacac catggatgac cagggtatga
1081cgccactgat gtacgcctgc gctgctgggg acgaagcgat ggtccagatg ttgattgatg
1141ctggggcaaa cttggacatc caggttccaa gcaactcccc caggcaccct tccatccacc
1201ccgacagccg gcactggacc tcactgacat tcgctgtgct gcatggacac atctctgtgg
1261tccagttgct gctggatgct ggtgcccatg tcgagggctc ggcagtgaac ggcggcgagg
1321acagctatgc ggagacgccc ctgcagctgg cctctgcggc agggaactat gagctggtca
1381gtttgttgct gagccgaggc gccgaccccc tcctcagcat gctggaggcc cacggcatgg
1441gctcctccct ccacgaggac atgaactgct tcagccactc agctgcccac ggccacagga
1501acgtcctgag gaagctcctg acgcagccac agcaggctaa agcggacgtg ctgtccctgg
1561aggagatcct ggccgagggt gtggaggaaa gtgatgcgtc gagccagggc agtggcagcg
1621aggggcccgt gcggctgagc cggacccgca ccaaggccct acaggaggcc atgtactaca
1681gcgctgagca cggctacgtg gacatcacca tggagctgag ggcactggga gtcccctgga
1741agctgcacat ctggatcgag tctctgagga cctcgttctc gcagtcgcgg tactcggtgg
1801tgcagagcct cctgcgggac ttcagctcca tcagagagga ggagtacaac gaggagctgg
1861tgaccgaggg cttgcagctc atgttcgaca tcctcaagac cagcaaaaac gactccgtca
1921tccagcaact ggctaccatc ttcacccact gctatggcag cagtcccatc cccagcatcc
1981cagagatccg gaagaccctg ccggccaggc tagatccaca ctttttgaac aataaggaga
2041tgtcagatgt gaccttcctg gtggaaggaa agctgtttta tgcacataaa gtcctgctgg
2101tgacagcttc taacaggttc aagacactaa tgaccaataa atcagaacag gatggggaca
2161gcagcaagac catcgagaTC AGCGACATGA AGTACCACAT TTTTCAGATG ATGATGCAGT
2221ATCTGTACTA CGGAGGAACA GAATCCATGG AGATCCCCAC CACTGACATC CTGGAGCTGC
2281TGTCAGCTGC CAGCCTGTTC CAGCTGGATG CCCTGCAGAG GCACTGCGAG ATCCTGTGCT
2341CCCAGACCCT CAGCATGGAG AGTGCCGTGA ACACCTACAA ATATGCCAAG ATCCACAATG
2401CCCCAGAACT GGCCCTGTTC TGTGAGGGCT TCTTCCTCAA GCACATGAAG GCCCTACTGG
2461AGCAGGATGC CTTCCGGCAG CTCATCTACG GCCGCAGCAG CAAAGTGCAG GGCCTGGATC
2521CACTGCAGGA CCTGCAGAAC ACCCTGGCAG AGCGCGTGCA CTCTGTCTAC ATCACCTCCC
2581GGGTGTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
2641TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
2701CTTGGCTTTA TATATCTTGT GGAAAGGACG AGAAAGACCA TGCATAGAAC GCAAGACGCG
2761TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)

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