Transcript: Human NM_145804.3

Homo sapiens ankyrin repeat and BTB domain containing 2 (ABTB2), mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
ABTB2 (25841)
Length:
4905
CDS:
428..3505

Additional Resources:

NCBI RefSeq record:
NM_145804.3
NBCI Gene record:
ABTB2 (25841)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_145804.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000282036 TCCACACGCTCTACTACTTTC pLKO_005 1578 CDS 100% 10.800 15.120 N ABTB2 n/a
2 TRCN0000137661 CCACACGCTCTACTACTTTCT pLKO.1 1579 CDS 100% 4.950 6.930 N ABTB2 n/a
3 TRCN0000135271 CGGCTCCTTTAATGTAGGATT pLKO.1 4401 3UTR 100% 4.950 3.960 N ABTB2 n/a
4 TRCN0000138691 GCTCAAACCCGAACACTGTTT pLKO.1 1819 CDS 100% 4.950 3.960 N ABTB2 n/a
5 TRCN0000275763 AGACACTAATGACCAATAAAT pLKO_005 3039 CDS 100% 15.000 10.500 N ABTB2 n/a
6 TRCN0000275818 GCGACATGAAGTACCACATTT pLKO_005 3099 CDS 100% 13.200 9.240 N ABTB2 n/a
7 TRCN0000275816 TGCCGTGAACACCTACAAATA pLKO_005 3280 CDS 100% 13.200 9.240 N ABTB2 n/a
8 TRCN0000138256 GCCCTAGAGCTGTTTGTTCAA pLKO.1 3669 3UTR 100% 4.950 3.465 N ABTB2 n/a
9 TRCN0000281978 GCCCTAGAGCTGTTTGTTCAA pLKO_005 3669 3UTR 100% 4.950 3.465 N ABTB2 n/a
10 TRCN0000137770 GCTCATGTTCGACATCCTCAA pLKO.1 2794 CDS 100% 4.050 2.835 N ABTB2 n/a
11 TRCN0000138948 GCAAACTTGGACATCCAGGTT pLKO.1 2063 CDS 100% 2.640 1.848 N ABTB2 n/a
12 TRCN0000138728 GCCTCAGTAAACTCAGACCAT pLKO.1 3863 3UTR 100% 2.640 1.848 N ABTB2 n/a
13 TRCN0000134367 GAACACCTACAAATATGCCAA pLKO.1 3286 CDS 100% 2.640 1.584 N ABTB2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_145804.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11774 pDONR223 100% 81.8% 81.8% None 1_558del n/a
2 ccsbBroad304_11774 pLX_304 0% 81.8% 81.8% V5 1_558del n/a
3 TRCN0000478075 GAAAGACCATGCATAGAACGCAAG pLX_317 16.4% 81.8% 81.8% V5 1_558del n/a
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