Construct: ORF TRCN0000478092
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005263.1_s317c1
- Derived from:
- ccsbBroadEn_01115
- DNA Barcode:
- TCGGGTACGGCTGGAAAGGACTTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OMD (4958)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478092
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4958 | OMD | osteomodulin | NM_005014.2 | 100% | 100% | |
| 2 | mouse | 27047 | Omd | osteomodulin | NM_012050.2 | 84.1% | 78.6% | (many diffs) |
| 3 | mouse | 27047 | Omd | osteomodulin | XM_006516928.2 | 84.1% | 78.6% | (many diffs) |
| 4 | mouse | 27047 | Omd | osteomodulin | XM_017315520.1 | 84.1% | 78.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1332
- ORF length:
- 1263
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gggtttttta agtccaatat atgttatttt cttctttttt ggagtcaaag 121 tacattgcca atatgaaact tatcagtggg atgaagacta tgaccaagag ccagatgatg 181 attaccaaac aggattccca tttcgtcaaa atgtagacta cggagttcct tttcatcagt 241 atactttagg ctgtgtcagt gaatgcttct gtccaactaa ctttccatca tcaatgtact 301 gtgataatcg caaactcaag actatcccaa atattccgat gcacattcag caactctacc 361 ttcagttcaa tgaaattgag gctgtgactg caaattcatt catcaatgca actcatctta 421 aagaaattaa cctcagccac aacaaaatta aatctcaaaa gattgattat ggtgtgtttg 481 ctaagcttcc aaatctacta caacttcatc tagagcataa taatttagaa gaatttccat 541 ttcctcttcc taaatctctg gaaagactcc ttcttggtta caatgaaatc tccaaactgc 601 agacaaatgc tatggatggg ctagtaaact tgaccatgct tgatctctgt tataattatc 661 ttcatgattc tctgctaaaa gacaaaatct ttgccaaaat ggaaaaacta atgcagctca 721 acctctgcag taacagatta gaatcaatgc ctcctggttt gccttcttca cttatgtatc 781 tgtctttaga aaataattca atttcttcta tacccgaaaa atacttcgac aaacttccaa 841 aacttcatac tctaagaatg tcacacaaca aactacaaga catcccatat aatattttta 901 atcttcccaa cattgtagaa ctcagtgttg gacacaacaa attgaagcaa gcattctata 961 ttccaagaaa tttggaacac ctatacctac aaaataatga aatagaaaag atgaatctta 1021 cagtgatgtg tccttctatt gacccactac attaccacca tttaacatac attcgtgtgg 1081 acCAAAATAA ACTAAAAGAA CCAATAAGCT CATACATCTT CTTCTGCTTC CCTCATATAC 1141 ACACTATTTA TTATGGTGAA CAACGAAGCA CTAATGGTCA AACAATACAA CTAAAGACAC 1201 AAGTTTTCAG GAGATTTCCA GATGATGATG ATGAAAGTGA AGATCACGAT GATCCTGACA 1261 ATGCTCATGA GAGCCCAGAA CAAGAAGGAG CAGAAGGGCA CTTTGACCTT CATTATTATG 1321 AAAATCAAGA ATTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 1381 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 1441 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATCG GGTACGGCTG GAAAGGACTT 1501 AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t