Construct: ORF TRCN0000478190

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015505.1_s317c1
Derived from:
ccsbBroadEn_01545
DNA Barcode:
TTGTTCTTCGAGCGACAGAAAGGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC3A2 (6520)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478190
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6520 SLC3A2 solute carrier family 3 mem... NM_001013251.3 100% 100%
2 human 6520 SLC3A2 solute carrier family 3 mem... NM_001012664.3 93.1% 93.1% 1_117del
3 human 6520 SLC3A2 solute carrier family 3 mem... NM_002394.6 83.9% 83.9% 1_303del
4 human 6520 SLC3A2 solute carrier family 3 mem... NM_001012662.3 83.8% 83.8% 1_306del
5 human 6520 SLC3A2 solute carrier family 3 mem... NR_037193.2 66.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1653
ORF length:
1587
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag ccaggacacc gaggtggata tgaaggaggt ggagctgaat gagttagagc
121ccgagaagca gccgatgaac gcggcgtctg gggcggccat gtccctggcg ggagccgaga
181agaatggtct ggtgaagatc aaggtggcgg aagacgaggc ggaggcggca gccgcggcta
241agttcacggg cctgtccaag gaggagctgc tgaaggtggc aggcagcccc ggctgggtac
301gcacccgctg ggcactgctg ctgctcttct ggctcggctg gctcggcatg cttgctggtg
361ccgtggtcat aatcgtgcga gcgccgcgtt gtcgcgagct accggcgcag aagtggtggc
421acacgggcgc cctctaccgc atcggcgacc ttcaggcctt ccagggccac ggcgcgggca
481acctggcggg tctgaagggg cgtctcgatt acctgagctc tctgaaggtg aagggccttg
541tgctgggtcc aattcacaag aaccagaagg atgatgtcgc tcagactgac ttgctgcaga
601tcgaccccaa ttttggctcc aaggaagatt ttgacagtct cttgcaatcg gctaaaaaaa
661agagcatccg tgtcattctg gaccttactc ccaactaccg gggtgagaac tcgtggttct
721ccactcaggt tgacactgtg gccaccaagg tgaaggatgc tctggagttt tggctgcaag
781ctggcgtgga tgggttccag gttcgggaca tagagaatct gaaggatgca tcctcattct
841tggctgagtg gcaaaatatc accaagggct tcagtgaaga caggctcttg attgcgggga
901ctaactcctc cgaccttcag cagatcctga gcctactcga atccaacaaa gacttgctgt
961tgactagctc atacctgtct gattctggtt ctactgggga gcatacaaaa tccctagtca
1021cacagtattt gaatgccact ggcaatcgct ggtgcagctg gagtttgtct caggcaaggc
1081tcctgacttc cttcttgccg gctcaacttc tccgactcta ccagctgatg ctcttcaccc
1141tgccagggac ccctgttttc agctacgggg atgagattgg cctggatgca gctgcccttc
1201ctggacagcc tatggaggct ccagtcatgc tgtgggatga gtccagcttc cctgacatcc
1261caggggctgt aagtgccaac atgactgtga agggccagag tgaagaccct ggctccctcc
1321tttccttgtt ccggcggctg agtgaccagc ggagtaagga gcgctcccta ctgcatgggg
1381acttccacgc gttcTCCGCT GGGCCTGGAC TCTTCTCCTA TATCCGCCAC TGGGACCAGA
1441ATGAGCGTTT TCTGGTAGTG CTTAACTTTG GGGATGTGGG CCTCTCGGCT GGACTGCAGG
1501CCTCCGACCT GCCTGCCAGC GCCAGCCTGC CAGCCAAGGC TGACCTCCTG CTCAGCACCC
1561AGCCAGGCCG TGAGGAGGGC TCCCCTCTTG AGCTGGAACG CCTGAAACTG GAGCCTCACG
1621AAGGGCTGCT GCTCCGCTTC CCCTACGCGG CCTGCCCAAC TTTCTTGTAC AAAGTGGTTG
1681ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1741GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATT
1801GTTCTTCGAG CGACAGAAAG GGACGCGTTA AGTCgacaat caacctctgg attacaaaat
1861ttgtgaaaga tt

Download FASTA (ORF) (Full)