Construct: ORF TRCN0000478193
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001597.1_s317c1
- Derived from:
- ccsbBroadEn_11346
- DNA Barcode:
- AGCGGCCCGTTCTTTAACCCATTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZMYM4 (9202)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478193
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | NM_001350139.2 | 100% | 100% | |
| 2 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | NM_001350140.2 | 100% | 100% | |
| 3 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | XM_005271331.2 | 100% | 100% | |
| 4 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | XM_024450838.1 | 100% | 100% | |
| 5 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | XM_017002805.1 | 94.7% | 94.3% | (many diffs) |
| 6 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | NM_001350138.2 | 80.7% | 80.7% | 1_876del |
| 7 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | XM_017002803.1 | 80.7% | 80.7% | 1_876del |
| 8 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | NM_005095.3 | 79% | 79% | 1_972del |
| 9 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | XM_005271328.4 | 78.9% | 78.9% | 1_981del |
| 10 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | XR_001737542.1 | 51.9% | 1_1332del;4154_4155ins152;4853_6628del | |
| 11 | human | 9202 | ZMYM4 | zinc finger MYM-type contai... | XR_246305.4 | 42.2% | 1_1334del;3393_3464del;3550_3551ins1528 | |
| 12 | mouse | 67785 | Zmym4 | zinc finger, MYM-type 4 | XM_006503343.3 | 71.7% | 74.9% | (many diffs) |
| 13 | mouse | 67785 | Zmym4 | zinc finger, MYM-type 4 | NM_001114399.1 | 71.7% | 74.9% | (many diffs) |
| 14 | mouse | 67785 | Zmym4 | zinc finger, MYM-type 4 | XM_017320370.1 | 66.1% | 69.2% | (many diffs) |
| 15 | mouse | 67785 | Zmym4 | zinc finger, MYM-type 4 | XM_006503344.3 | 66.1% | 69.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3738
- ORF length:
- 3672
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa taaaatgctt ccttcagttc cagccacagc tgttcgagtt tcctgttctg 121 gttgtaaaaa aatcctccag aaggggcaaa ctgcttatca gaggaaaggg tctactcagc 181 tattctgctc cacactgtgc ctcactggat atacagttcc acctgcccgc ccaccgcctc 241 ctctcaccaa gaaaacttgt tcaagttgct caaaagacat tttaaatcca aaggatgtga 301 tcagtgccca gtttgaaaac accaccacta gtaaagattt ttgcagtcag tcatgtttgt 361 caacatatga actgaaaaaa aaacctattg ttaccataaa tacaaatagt atttcaacca 421 aatgcagcat gtgtcagaag aatgctgtta ttcgacatga agttaattac cagaatgtgg 481 tccataaact ttgcagtgat gcctgcttct ctaagtttcg ttctgctaac aacctcacca 541 tgaactgttg tgagaactgt gggggttact gttacagtgg gtcgggacaa tgccacatgc 601 ttcagataga gggacagtct aagaagtttt gtagttcatc gtgtatcacg gcatacaagc 661 agaaatcagc caaaattaca ccgtgtgcgc tttgcaaatc attgagatcc tcagcagaaa 721 tgattgaaaa taccaatagc ttggggaaga cagagctttt ctgttctgtt aattgcttat 781 ctgcttacag agttaaaatg gttacttctg caggtgtaca agttcagtgt aacagttgta 841 aaacctcagc aattcctcag tatcacctag ccatgtcaga tggaagtata cgcaacttct 901 gcagctacag ctgtgtggta gctttccaga atttattcaa caaaccaact ggaatgaatt 961 cttcagtagt gcccttgtct cagggccaag taattgtaag catccccaca ggttccacag 1021 tgtcagccgg aggaggtagc acatctgctg tttctcccac ctccatcagt agctctgctg 1081 cagctggtct ccagcgtctc gctgcccagt cccagcatgt tgggtttgca cgaagtgttg 1141 tgaaactcaa atgtcaacac tgtaaccgtc tttttgccac aaaaccagaa cttcttgact 1201 ataagggcaa aatgtttcag ttctgtggca agaattgttc tgatgaatat aagaaaataa 1261 ataatgtaat ggcaatgtgt gaatattgta aaattgagaa aattgtaaag gagactgttc 1321 ggttctcagg tgctgacaag tcattctgta gtgaaggttg caaattgctt tataaacatg 1381 acttggcaaa acgctgggga aatcactgta aaatgtgcag ttattgttta cagacatctc 1441 ccaaattggt acagaataat ttaggaggga aagtggaaga gttctgttgt gaagaatgca 1501 tgtccaaata tacagttttg ttctatcaga tggccaaatg tgatgcttgt aagcgacagg 1561 gtaaactcag tgagtccttg aaatggcgag gggaaatgaa acatttctgt aacctgcttt 1621 gtatcttgat gttctgtaat cagcaaagtg tatgtgaccc gccttcacaa aataatgcag 1681 caaatatttc catggttcaa gctgcttcag caggaccccc atctctgaga aaagattcga 1741 ctccagttat agccaatgta gtatcattgg caagtgcccc tgctgctcag cctacagtga 1801 attctaacag tgtcttacaa ggtgcagttc caacagtaac agcgaaaatc atcggtgatg 1861 caagtactca aacagatgcc ctgaaactgc caccttccca acctccaagg cttttgaaga 1921 acaaagcttt attatgcaaa cccatcacac agactaaagc cacctcttgc aaaccacata 1981 cccaaaacaa agaatgccag acagaagaca ctccaagtca gccccagatt attgtggtgc 2041 cagttcccgt accagtgttt gttcccatac ctcttcacct ttatactcaa tatgctccag 2101 tcccatttgg aattccagtt ccaatgcctg tccctatgct tattccatct tcaatggata 2161 gtgaagataa agtcacagag agtattgaag acattaaaga aaagcttccc acacatccat 2221 ttgaagctga tctccttgag atggcagaaa tgattgcaga agatgaagag aagaagactc 2281 tatctcaggg agagtcccaa acttctgaac acgaactctt tctagacacc aagatatttg 2341 aaaaagacca aggaagtaca tacagtggtg atcttgaatc agaggcagta tctactccac 2401 atagctggga ggaagagctg aatcactatg ccttaaagtc aaatgctgtg caagaggctg 2461 attcagaatt gaagcagttc tcaaaagggg aaactgaaca ggacctggaa gcagattttc 2521 catcagactc ctttgaccca cttaataaag gacagggaat ccaggcacgt tcccgaacaa 2581 gacgacgaca cagagatggc ttcccccaac ccagacgaag aggacggaag aagtctatag 2641 tggctgtgga gcccaggagt cttattcaag gagcctttca aggctgctca gtgtccggga 2701 tgacactgaa atacatgtat ggggtaaatg cttggaagaa ctgggttcag tggaaaaatg 2761 ccaaggaaga gcagggggat ctaaaatgtg gaggggttga acaggcctca tctagcccac 2821 gttctgaccc cttaggaagt actcaagacc atgcactctc tcaagaatcc tcagagccag 2881 gctgtagagt ccgctctatc aagctgaagg aagacattct gtcctgcact tttgctgagt 2941 tgagtttggg cttatgccag tttatccaag aggtgcggag accaaatggt gaaaaatatg 3001 atccagacag tatcttatac ttgtgccttg gaattcaaca gtacctgttt gaaaatggta 3061 gaatagataa catttttact gagccctatt ccagatttat gattgaactt accaaactct 3121 tgaaaatatg ggaacctaca atacttccta atggttacat gttctctcgc attgaggaag 3181 agcatttgtg ggagtgcaaa cagctgggcg cttactcacc aatcgtcctt ttaaacaccc 3241 tccttttctt caataccaaa tacttccaac taaagaatgt tactgagcac ttgaagcttt 3301 cctttgccca tgtgatgaga cggaccagga ctctgaagta cagtaccaag atgacatatc 3361 tgaggttctt cccaccttta cagaagcagg agtcagaacc agataaactg actgttggca 3421 agaggaaacg aaatgaagat gatgaggttc cagtgggggt ggagatggca gagaatactg 3481 acaaTCCACT AAGATGCCCA GTCCGACTTT ATGAGTTTTA CCTGTCAAAA TGTTCTGAAA 3541 GTGTGAAGCA AAGGAATGAT GTGTTTTACC TTCAACCTGA GCGCTCCTGT GTCCCGAATA 3601 GCCCCATGTG GTACTCCACA TTCCCGATAG ACCCTGGAAC CCTGGACACC ATGTTAACAC 3661 GTATTCTCAT GGTGAGGGAG GTACATGAAG AACTTGCCAA AGCCAAATCT GAAGACTCTG 3721 ATGTTGAATT ATCAGATTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 3781 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 3841 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAAGCGGCC CGTTCTTTAA 3901 CCCATTTACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt