Construct: ORF TRCN0000478208

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002118.1_s317c1
Derived from:
ccsbBroadEn_06783
DNA Barcode:
AGGTCAAGAGCCTGGGTCCTGATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LGMN (5641)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478208
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5641 LGMN legumain NM_001008530.3 99.7% 99.7% 52G>A;720T>C;1251G>A
2 human 5641 LGMN legumain NM_005606.7 99.7% 99.7% 52G>A;720T>C;1251G>A
3 human 5641 LGMN legumain XM_017021463.1 99.7% 99.7% 52G>A;720T>C;1251G>A
4 human 5641 LGMN legumain XM_017021464.1 99.7% 99.7% 52G>A;720T>C;1251G>A
5 human 5641 LGMN legumain XM_017021465.1 99.7% 99.7% 52G>A;720T>C;1251G>A
6 human 5641 LGMN legumain XM_011536970.2 90.7% 90.3% (many diffs)
7 human 5641 LGMN legumain NM_001363696.2 86.6% 86.6% (many diffs)
8 human 5641 LGMN legumain XM_005267862.4 86.6% 86.6% (many diffs)
9 human 5641 LGMN legumain NM_001363699.2 81.8% 80.8% (many diffs)
10 human 5641 LGMN legumain XM_005267863.4 81.8% 80.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1365
ORF length:
1299
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt ttggaaagta gctgtattcc tcagtgtggc cctgggcatt ggtgccattc
121ctatagatga tcctgaagat ggaggcaagc actgggtggt gatcgtggca ggttcaaatg
181gctggtataa ttataggcac caggcagacg cgtgccatgc ctaccagatc attcaccgca
241atgggattcc tgacgaacag atcgttgtga tgatgtacga tgacattgct tactctgaag
301acaatcccac tccaggaatt gtgatcaaca ggcccaatgg cacagatgtc tatcagggag
361tcccgaagga ctacactgga gaggatgtta ccccacaaaa tttccttgct gtgttgagag
421gcgatgcaga agcagtgaag ggcataggat ccggcaaagt cctgaagagt ggcccccagg
481atcacgtgtt catttacttc actgaccatg gatctactgg aatactggtt tttcccaatg
541aagatcttca tgtaaaggac ctgaatgaga ccatccatta catgtacaaa cacaaaatgt
601accgaaagat ggtgttctac attgaagcct gtgagtctgg gtccatgatg aaccacctgc
661cggataacat caatgtttat gcaactactg ctgccaaccc cagagagtcg tcctacgcct
721gttactatga tgagaagagg tccacgtacc tgggggactg gtacagcgtc aactggatgg
781aagactcgga cgtggaagat ctgactaaag agaccctgca caagcagtac cacctggtaa
841aatcgcacac caacaccagc cacgtcatgc agtatggaaa caaaacaatc tccaccatga
901aagtgatgca gtttcagggt atgaaacgca aagccagttc tcccgtcccc ctacctccag
961tcacacacct tgacctcacc cccagccctg atgtgcctct caccatcatg aaaaggaaac
1021tgatgaacac caatgatctg gaggagtcca ggcagctcac ggaggagatc cagcggcatc
1081tggatgccag gcaccTCATT GAGAAGTCAG TGCGTAAGAT CGTCTCCTTG CTGGCAGCGT
1141CCGAGGCTGA GGTGGAGCAG CTCCTGTCCG AGAGAGCCCC GCTCACGGGG CACAGCTGCT
1201ACCCAGAGGC CCTGCTGCAC TTCCGGACCC ACTGCTTCAA CTGGCACTCC CCCACGTACG
1261AGTATGCGTT GAGACATTTG TACGTGCTGG TCAACCTTTG TGAGAAGCCG TATCCACTTC
1321ACAGGATAAA ATTGTCCATG GACCACGTGT GCCTTGGTCA CTACTGCCCA ACTTTCTTGT
1381ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1441AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1501GAAAGGACGA AGGTCAAGAG CCTGGGTCCT GATCACGCGT TAAGTCgaca atcaacctct
1561ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)