Construct: ORF TRCN0000478221

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008879.1_s317c1
Derived from:
ccsbBroadEn_01978
DNA Barcode:
GCCCACTCGCTACGATAAATGTGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGB4 (8641)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478221
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8641 PCDHGB4 protocadherin gamma subfami... NM_032098.1 100% 100%
2 human 8641 PCDHGB4 protocadherin gamma subfami... NM_003736.3 86.8% 86.5% (many diffs)
3 human 56101 PCDHGB5 protocadherin gamma subfami... NM_032099.1 82.6% 81.8% (many diffs)
4 human 56101 PCDHGB5 protocadherin gamma subfami... NM_018925.2 73.1% 72.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2478
ORF length:
2409
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggggagcggc gccggggagc tgggccgggc tgagaggctg ccagtgctct
121ttctcttcct gctgtctttg ttctgcccgg cgctctgtga gcagatccgc tacaggattc
181ccgaggaaat gcccaagggc tccgtagtgg ggaacctcgc cacggacctg gggttcagcg
241tccaggagtt accgactcga aaactgcgcg tcagttcgga gaagccttac ttcaccgtga
301gcgcagagag cggggagttg cttgtgagca gcaggctaga cagggaggag atatgcggga
361agaagccagc ttgtgctctg gaatttgagg ctgttgctga aaatccactg aacttttatc
421acgtgaatgt ggagatcgag gacattaatg accacacgcc aaaattcacg caaaattcct
481ttgagctgca aataagtgag tctgcacagc ctggcacacg atttatatta ggatctgccc
541atgatgcgga tattggtagc aacacactgc agaattacca actcagtccc agtgatcatt
601tctcactgat aaataaagag aaatcagatg gcagtaaata ccctgagatg gtattgaaga
661cacctttgga cagagaaaag cagaaatcct accacttgac tttgactgcc ttggactttg
721gagctccacc cctaagcagc actgcacaga tacacgttct agtgactgat gccaatgata
781atgctccagt gttcagtcaa gacgtataca gggtgagcct ttcagaaaac gtgtacccgg
841ggaccacggt gctacaggtg actgccacgg accaggatga gggtgtcaat gccgagatta
901ctttctcttt cagtgaagct agccagatca cccaatttga cctgaactct aacaccgggg
961aaattactgt tttaaataca ttagattttg aagaagtcaa agaatattcc atagttttgg
1021aagcaaggga cggtggagga atgattgcgc aatgcacagt ggaggtagaa gtcatagatg
1081aaaatgacaa cgccccagaa gtgatattcc agtctctacc caacctaatt atggaggacg
1141ccgagctggg aacacatatt gctttgctca aagtccgtga caaggattcc agacacaatg
1201gagaagtgac ttgtaaattg gaaggtgatg ttccatttaa aatattaact tcttcaagaa
1261acacgtataa attagtgaca gatgctgttc tagaccgcga gcagaatcca gagtacaata
1321taaccgttac ggcaacagat cggggcaagc ctcccctctc ctccagttcc agcatcaccc
1381tgcacattgg tgatgtaaat gacaacgctc cggttttctc acagtcttcc tatatagtcc
1441acgtggccga gaacaacccg cctggagcct ctatttcaca agtcagggct tctgatccgg
1501acttggggcc caacggccaa gtctcttact gcatcatggc cagtgacctg gagcagcggg
1561agctgtcatc ctacgtgtcc ataagcgcgg agagcggggt ggtgttcgcg cagcgcgcct
1621tcgaccacga gcagctgcgc gccttcgaac tcacactgca ggcccgcgac cagggctcgc
1681cagcgctcag cgcgaacgtg agcctgcgcg tgttagtgga cgaccgcaac gacaatgcgc
1741cacgggtgct gtaccccgcg ctgggtcccg acggctctgc gctcttcgat atggtgccgc
1801acgctgcaga gcctggctac ttggtgacca aggtagtggc ggtggacgca gactcaggac
1861acaacgcctg gctgtcctac cacgtgctgc aggctagcga gcccgggctc ttcagcctgg
1921ggctgcgcac gggcgaagtg cgcacagcgc gtgccttagg cgacagggac gccgtccgcc
1981agcgccttct ggtcgccgtg cgtgacggtg gacagccacc actctcggcc actgccacgt
2041tgcacctggt cttcgccgac agcttgcagg aggtgctgcc ggatatcact gaccgccccg
2101acccctctga cctccaggct gagctgcagt tttacctagt ggtggccttg gccttgatct
2161cagtgctctt cctcgtggcc atgattctgg ccattgcctt gcgcctgcga cgctcctcca
2221gccccgcctc ctGGAGCTGC TTCCAGCCTG GTCTCTGTGT TAAATCCGAA TCCGTGGTTC
2281CCCCCAACTA CAGCGAGGGG ACTTTGCCTT ATTCCTACAA TCTATGTGTT GCACATACAG
2341GAAAGACGGA GTTTAATTTC CTAAAATGTA GTGAGCAGTT GAGTTCAGGA CAAGACATAC
2401TTTGCGGTGA TTCATCTGGG GCCTTATTTC CACTTTGTAA TTCCAGTGAA TTGACTTCCC
2461ATCAGGTGAG TTTCCTTTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
2521TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
2581GTATTTCGAT TTCTTGCTTT ATATATCTTG TGGAAAGGAC GAGCCCACTC GCTACGATAA
2641ATGTGGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)

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