Construct: ORF TRCN0000478303
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010560.1_s317c1
- Derived from:
- ccsbBroadEn_02324
- DNA Barcode:
- GAACATGTTCCCGTTTCGAATCAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAP1 (10131)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478303
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10131 | TRAP1 | TNF receptor associated pro... | NM_016292.3 | 100% | 100% | |
| 2 | human | 10131 | TRAP1 | TNF receptor associated pro... | NM_001272049.2 | 92.4% | 92.4% | 87_88ins159 |
| 3 | human | 10131 | TRAP1 | TNF receptor associated pro... | XM_011522345.2 | 80.1% | 80.1% | 0_1ins420 |
| 4 | mouse | 68015 | Trap1 | TNF receptor-associated pro... | NM_026508.2 | 84.1% | 88.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2178
- ORF length:
- 2112
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc gcgcgagctg cgggcgctgc tgctgtgggg ccgccgcctg cggcctttgc 121 tgcgggcgcc ggcgctggcg gccgtgccgg gaggaaaacc aattctgtgt cctcggagga 181 ccacagccca gttgggcccc aggcgaaacc cagcctggag cttgcaggca ggacgactgt 241 tcagcacgca gaccgccgag gacaaggagg aacccctgca ctcgattatc agcagcacag 301 agagcgtgca gggttccact tccaaacatg agttccaggc cgagacaaag aagcttttgg 361 acattgttgc ccggtccctg tactcagaaa aagaggtgtt tatacgggag ctgatctcca 421 atgccagcga tgccttggaa aaactgcgtc acaaactggt gtctgacggc caagcactgc 481 cagaaatgga gattcacttg cagaccaatg ccgagaaagg caccatcacc atccaggata 541 ctggtatcgg gatgacacag gaagagctgg tgtccaacct ggggacgatt gccagatcgg 601 ggtcaaaggc cttcctggat gctctgcaga accaggctga ggccagcagc aagatcatcg 661 gccagtttgg agtgggtttc tactcagctt tcatggtggc tgacagagtg gaggtctatt 721 cccgctcggc agccccgggg agcctgggtt accagtggct ttcagatggt tctggagtgt 781 ttgaaatcgc cgaagcttcg ggagttagaa ccgggacaaa aatcatcatc cacctgaaat 841 ccgactgcaa ggagttttcc agcgaggccc gggtgcgaga tgtggtaacg aagtacagca 901 acttcgtcag cttccccttg tacttgaatg gaaggcggat gaacaccttg caggccatct 961 ggatgatgga ccccaaggat gtccgtgagt ggcaacatga ggagttctac cgctacgtcg 1021 cgcaggctca cgacaagccc cgctacaccc tgcactataa gacggacgca ccgctcaaca 1081 tccgcagcat cttctacgtg cccgacatga aaccgtccat gtttgatgtg agccgggagc 1141 tgggctccag cgttgcactg tacagccgca aagtcctcat ccagaccaag gccacggaca 1201 tcctgcccaa gtggctgcgc ttcatccgag gtgtggtgga cagtgaggac attcccctga 1261 acctcagccg ggagctgctg caggagagcg cactcatcag gaaactccgg gacgttttac 1321 agcagaggct gatcaaattc ttcattgacc agagtaaaaa agatgctgag aagtatgcaa 1381 agttttttga agattacggc ctgttcatgc gggagggcat tgtgaccgcc accgagcagg 1441 aggtcaagga ggacatagca aagctgctgc gctacgagtc ctcggcgctg ccctccgggc 1501 agctaaccag cctctcagaa tacgccagcc gcatgcgggc cggcacccgc aacatctact 1561 acctgtgcgc ccccaaccgt cacctggcag agcactcacc ctactatgag gccatgaaga 1621 agaaagacac agaggttctc ttctgctttg agcagtttga tgagctcacc ctgctgcacc 1681 ttcgtgagtt tgacaagaag aagctgatct ctgtggagac ggacatagtc gtggatcact 1741 acaaggagga gaagtttgag gacaggtccc cagccgccga gtgcctatca gagaaggaga 1801 cggaggagct catggcctgg atgagaaatg tgctggggtc gcgtgtcacc aacgtgaagg 1861 tgacccTCCG ACTGGACACC CACCCTGCCA TGGTCACCGT GCTGGAGATG GGGGCTGCCC 1921 GCCACTTCCT GCGCATGCAG CAGCTGGCCA AGACCCAGGA GGAGCGCGCA CAGCTCCTGC 1981 AGCCCACGCT GGAGATCAAC CCCAGGCACG CGCTCATCAA GAAGCTGAAT CAGCTGCGCG 2041 CAAGCGAGCC TGGCCTGGCT CAGCTGCTGG TGGATCAGAT ATACGAGAAC GCCATGATTG 2101 CTGCTGGACT TGTTGACGAC CCTAGGGCCA TGGTGGGCCG CTTGAATGAG CTGCTTGTCA 2161 AGGCCCTGGA GCGACACTGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 2221 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 2281 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGAACATG TTCCCGTTTC 2341 GAATCACACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt