Construct: ORF TRCN0000478358

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009473.1_s317c1
Derived from:
ccsbBroadEn_07258
DNA Barcode:
TACCATCTGGAAGTTTTACAGCGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
APOL1 (8542)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478358
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8542 APOL1 apolipoprotein L1 NM_001136540.1 99.5% 99.2% (many diffs)
2 human 8542 APOL1 apolipoprotein L1 NM_003661.4 99.5% 99.2% (many diffs)
3 human 8542 APOL1 apolipoprotein L1 NM_145343.2 95.7% 95.4% (many diffs)
4 human 8542 APOL1 apolipoprotein L1 NM_001136541.1 95% 94.7% (many diffs)
5 human 8542 APOL1 apolipoprotein L1 NM_001362927.2 95% 94.7% (many diffs)
6 human 8542 APOL1 apolipoprotein L1 XM_011530478.2 69.1% 68.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1263
ORF length:
1194
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggnnncat ggagggagct gctttgctga gagtctctgt cctctgcatc tggatgagtg
121cacttttcct tggtgtggga gtgagggcag aggaagctgg agcgagggtg caacaaaacg
181ttccaagtgg gacagatact ggagatcctc aaagtaagcc cctcggtgac tgggctgctg
241gcaccatgga cccagagagc agtatcttta ttgaggatgc cattaagtat ttcaaggaaa
301aagtgagcac acagaatctg ctactcctgc tgactgataa tgaggcctgg aacggattcg
361tggctgctgc tgaactgccc aggaatgagg cagatgagct ccgtaaagct ctggacaacc
421ttgcaagaca aatgatcatg aaagacaaaa actggcacga taaaggccag cagtacagaa
481actggtttct gaaagagttt cctcggttga aaagtnagct tgaggataac ataagaaggc
541tccgtgccct tgcagatggg gttcagaagg tccacaaagg caccaccatc gccaatgtgg
601tgtctggctc tctcagcatt tcctctggca tcctgaccct cgtcggcatg ggtctggcac
661ccttcacaga gggaggcagc cttgtactct tggaacctgg gatggagttg ggaatcacag
721cagctttgac cgggattacc agcagtacca tagactacgg aaagaagtgg tggacacaag
781cccaagccca cgacctggtc atcaaaagcc ttgacaaatt gaaggaggtg aaggagtttt
841tgggtgagaa catatccaac tttctttcct tagctggcaa tacttaccaa ctcacacgag
901gcattgggaa ggacatccgt gccctcagac gagccagagc caatcttcag tcagtaccgc
961atgccTCAGC CTCACGCCCC CGGGTCACTG AGCCAATCTC AGCTGAAAGC GGTGAACAGG
1021TGGAGAGAGT TAATGAACCC AGCATCCTGG AAATGAGCAG AGGAGTCAAG CTCACGGATG
1081TGGCCCCTGT AAGCTTCTTT CTTGTGCTGG ATGTAGTCTA CCTCGTGTAC GAATCAAAGC
1141ACTTACATGA GGGGGCAAAG TCAGAGACAG CTGAGGAGCT GAAGAAGGTG GCTCAGGAGC
1201TGGAGGAGAA GCTAAACATT CTCAACAATA ATTATAAGAT TCTGCAGGCG GACCAAGAAC
1261TGTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1321TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1381GGCTTTATAT ATCTTGTGGA AAGGACGATA CCATCTGGAA GTTTTACAGC GAACGCGTTA
1441AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)