Construct: ORF TRCN0000478396
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017426.1_s317c1
- Derived from:
- ccsbBroadEn_15738
- DNA Barcode:
- CATTCTCCTGGGCCGTCTGAAATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPUL1 (11100)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478396
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258463.4 | 14.5% | 2.3% | (many diffs) |
| 2 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258464.4 | 14.5% | 2.3% | (many diffs) |
| 3 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258465.5 | 14.5% | 2.3% | (many diffs) |
| 4 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526393.3 | 14.5% | 2.3% | (many diffs) |
| 5 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526394.3 | 14.5% | 2.3% | (many diffs) |
| 6 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526395.3 | 14.5% | 2.3% | (many diffs) |
| 7 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258461.5 | 14.3% | 2.3% | (many diffs) |
| 8 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526392.3 | 12.7% | 8.9% | (many diffs) |
| 9 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_007040.6 | 11.8% | 8.3% | (many diffs) |
| 10 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258459.4 | 11.6% | 8.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 432
- ORF length:
- 366
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga tgtgcgccgt ctgaaggtga acgaacttcg cgaggagctg cagcgccgcg 121 gcctggacac tcgaggccTC AAGGCCGAGC TTGCTGAGCG GCTGCAGGCG GCGTTGGAGG 181 CCGAGGAGCC TGACGACGAG CGGGAGCTCG ACGCCGACGA CGAACCGGGG CGACCCGGGC 241 ACATCAACGA GGAGGCCGAG TTACAGCCAG CCACCCTACA ACCAGGGAGG TTACAGCCAG 301 GGCTACACAG CCCCACCGCC TCCACCTCCA CCACCACCTG CCTACAACTA TGGGAGCTAC 361 GGCGGTTACA ACCCGGCCCC CTATACCCCA CCGCCACCCC CCACCGCACA GACCTACCCT 421 CAGCCCAGCT ATACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 481 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 541 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACAT TCTCCTGGGC CGTCTGAAAT 601 TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t