Construct: ORF TRCN0000478408
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000962.1_s317c1
- Derived from:
- ccsbBroadEn_11165
- DNA Barcode:
- CATCACATATAAATGAGGACATGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STRN (6801)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478408
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6801 | STRN | striatin | XM_005264519.5 | 98.3% | 98.3% | 81_116del |
| 2 | human | 6801 | STRN | striatin | NM_003162.4 | 93.7% | 93.5% | 81_116del;932_1042del |
| 3 | human | 6801 | STRN | striatin | XM_011533073.2 | 90.3% | 90.3% | 81_116del;931_1128del |
| 4 | human | 729862 | LSP1P3 | LSP1 pseudogene 3 | NR_033961.1 | 15.4% | (many diffs) | |
| 5 | mouse | 268980 | Strn | striatin, calmodulin bindin... | NM_011500.2 | 84.1% | 90.6% | (many diffs) |
| 6 | mouse | 268980 | Strn | striatin, calmodulin bindin... | XM_006524357.2 | 81.1% | 87.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2262
- ORF length:
- 2193
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggacgagcag gcgggtcccg gcgtcttctt cagcaacaac cacccgggcg 121 ccggcggtgc caaggggctc gggcctctgg cgggggcggc ccgagcccag tacagtctcc 181 cggggatcct gcacttcctg cagcacgagt gggcccgctt cgaggtggag agagcccagt 241 gggaggtgga gcgggcggag ctgcaggccc agattgcctt cctgcaggga gaaaggaagg 301 gccaagaaaa tttgaagaag gatcttgtga ggaggatcaa aatgttggag tatgctctta 361 aacaggaaag agccaaatac cacaagttga aatacgggac agaattgaat cagggagata 421 tgaagcctcc aagctatgat tctgatgaag gtaatgaaac agaagtgcag ccacaacaaa 481 acagccagtt aatgtggaaa caaggtcgac aactactcag acagtatcta caggaggtgg 541 gttatacaga tactattcta gatgtgaaat ctaaacgagt gcgagctttg ttgggctttt 601 caagtgatgt cacggacagg gaagatgaca aaaatcagga ctcagttgta aatggcacag 661 aggctgaagt taaagagaca gcaatgattg caaaatctga gttaacagat tctgcctccg 721 tgctggataa tttcaaattc cttgaaagtg cagctgcaga tttcagtgat gaagatgaag 781 atgatgatgt tgatggaaga gagaaaagcg tcattgatac ttcaacaatt gttaggaaaa 841 aagcattgcc tgacagcggt gaagatcgag atacaaaaga agctctaaag gagtttgact 901 tcttggttac atcagaggaa ggagacaatg aatctagaag tgcaggcgat ggaacagact 961 gggggcccaa taggtcaaaa ctacaagata tgcttgctaa tttgagagat gttgatgaac 1021 ttccttcatt gcagccatct gtgggttcac cttccagacc cagcagctcc aggcttcctg 1081 aacatgaaat taatagggca gatgaagtgg aagcattgac atttcctcct tcttctggaa 1141 agtcattcat catgggagca gatgaagccc ttgaaagtga actgggactt ggagaactag 1201 caggccttac ggtggccaat gaagcagact cactaactta tgatatagca aacaataaag 1261 atgcattgag gaagacatgg aaccctaagt ttacattgag aagtcacttt gatggcatcc 1321 gagcccttgc tttccatccc attgagcctg ttttgataac agcatcagag gatcacacat 1381 taaaaatgtg gaatttacag aaaacagccc cagccaaaaa gagcacttct cttgatgtag 1441 aacctatcta tacattcaga gcccataaag gtccagtgct ttgtgtggta atgagcagca 1501 atggtgagca gtgttacagt ggtggtactg atggactgat ccagggctgg aataccacta 1561 atcccaacat cgacccctat gattcttatg atccttctgt tttacgaggc cctctgctag 1621 gccacacgga tgcagtctgg ggtttggctt atagtgcagc acatcagcgt ttgttgtcct 1681 gttcagcaga tggcactctg cgtttatgga atacaactga ggttgctcca gcactaagtg 1741 tatttaatga tactaaagaa ctgggaatcc ctgcctctgt ggatctagtg agcagtgacc 1801 cgagccatat ggtagcatca ttcagcaagg gatatacaag catttttaac atggaaacac 1861 aacaacgcat tctcacttta gaatccaatg tagatacaac agccaactct tcctgccaaa 1921 taaatagagt catcagtcat cctacTCTTC CGATCAGCAT CACTGCTCAT GAAGACAGGC 1981 ACATCAAATT CTATGATAAC AATACAGGCA AACTGATCCA CTCGATGGTA GCCCACCTAG 2041 AAGCTGTTAC AAGTTTAGCA GTTGATCCCA ATGGCCTTTA CTTGATGTCT GGCAGTCATG 2101 ACTGTTCAAT ACGTTTATGG AATCTAGAAA GTAAGACGTG TATCCAAGAA TTCACAGCTC 2161 ATCGAAAAAA GTTTGAAGAA TCGATTCATG ATGTAGCTTT CCACCCATCC AAATGCTATA 2221 TAGCCAGTGC TGGAGCTGAC GCACTGGCTA AAGTCTTTGT ATTGCCAACT TTCTTGTACA 2281 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 2341 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 2401 AGGACGACAT CACATATAAA TGAGGACATG GACGCGTTAA GTCgacaatc aacctctgga 2461 ttacaaaatt tgtgaaagat t