Construct: ORF TRCN0000478408

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000962.1_s317c1
Derived from:
ccsbBroadEn_11165
DNA Barcode:
CATCACATATAAATGAGGACATGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STRN (6801)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478408
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6801 STRN striatin XM_005264519.5 98.3% 98.3% 81_116del
2 human 6801 STRN striatin NM_003162.4 93.7% 93.5% 81_116del;932_1042del
3 human 6801 STRN striatin XM_011533073.2 90.3% 90.3% 81_116del;931_1128del
4 human 729862 LSP1P3 LSP1 pseudogene 3 NR_033961.1 15.4% (many diffs)
5 mouse 268980 Strn striatin, calmodulin bindin... NM_011500.2 84.1% 90.6% (many diffs)
6 mouse 268980 Strn striatin, calmodulin bindin... XM_006524357.2 81.1% 87.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2262
ORF length:
2193
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggacgagcag gcgggtcccg gcgtcttctt cagcaacaac cacccgggcg
121ccggcggtgc caaggggctc gggcctctgg cgggggcggc ccgagcccag tacagtctcc
181cggggatcct gcacttcctg cagcacgagt gggcccgctt cgaggtggag agagcccagt
241gggaggtgga gcgggcggag ctgcaggccc agattgcctt cctgcaggga gaaaggaagg
301gccaagaaaa tttgaagaag gatcttgtga ggaggatcaa aatgttggag tatgctctta
361aacaggaaag agccaaatac cacaagttga aatacgggac agaattgaat cagggagata
421tgaagcctcc aagctatgat tctgatgaag gtaatgaaac agaagtgcag ccacaacaaa
481acagccagtt aatgtggaaa caaggtcgac aactactcag acagtatcta caggaggtgg
541gttatacaga tactattcta gatgtgaaat ctaaacgagt gcgagctttg ttgggctttt
601caagtgatgt cacggacagg gaagatgaca aaaatcagga ctcagttgta aatggcacag
661aggctgaagt taaagagaca gcaatgattg caaaatctga gttaacagat tctgcctccg
721tgctggataa tttcaaattc cttgaaagtg cagctgcaga tttcagtgat gaagatgaag
781atgatgatgt tgatggaaga gagaaaagcg tcattgatac ttcaacaatt gttaggaaaa
841aagcattgcc tgacagcggt gaagatcgag atacaaaaga agctctaaag gagtttgact
901tcttggttac atcagaggaa ggagacaatg aatctagaag tgcaggcgat ggaacagact
961gggggcccaa taggtcaaaa ctacaagata tgcttgctaa tttgagagat gttgatgaac
1021ttccttcatt gcagccatct gtgggttcac cttccagacc cagcagctcc aggcttcctg
1081aacatgaaat taatagggca gatgaagtgg aagcattgac atttcctcct tcttctggaa
1141agtcattcat catgggagca gatgaagccc ttgaaagtga actgggactt ggagaactag
1201caggccttac ggtggccaat gaagcagact cactaactta tgatatagca aacaataaag
1261atgcattgag gaagacatgg aaccctaagt ttacattgag aagtcacttt gatggcatcc
1321gagcccttgc tttccatccc attgagcctg ttttgataac agcatcagag gatcacacat
1381taaaaatgtg gaatttacag aaaacagccc cagccaaaaa gagcacttct cttgatgtag
1441aacctatcta tacattcaga gcccataaag gtccagtgct ttgtgtggta atgagcagca
1501atggtgagca gtgttacagt ggtggtactg atggactgat ccagggctgg aataccacta
1561atcccaacat cgacccctat gattcttatg atccttctgt tttacgaggc cctctgctag
1621gccacacgga tgcagtctgg ggtttggctt atagtgcagc acatcagcgt ttgttgtcct
1681gttcagcaga tggcactctg cgtttatgga atacaactga ggttgctcca gcactaagtg
1741tatttaatga tactaaagaa ctgggaatcc ctgcctctgt ggatctagtg agcagtgacc
1801cgagccatat ggtagcatca ttcagcaagg gatatacaag catttttaac atggaaacac
1861aacaacgcat tctcacttta gaatccaatg tagatacaac agccaactct tcctgccaaa
1921taaatagagt catcagtcat cctacTCTTC CGATCAGCAT CACTGCTCAT GAAGACAGGC
1981ACATCAAATT CTATGATAAC AATACAGGCA AACTGATCCA CTCGATGGTA GCCCACCTAG
2041AAGCTGTTAC AAGTTTAGCA GTTGATCCCA ATGGCCTTTA CTTGATGTCT GGCAGTCATG
2101ACTGTTCAAT ACGTTTATGG AATCTAGAAA GTAAGACGTG TATCCAAGAA TTCACAGCTC
2161ATCGAAAAAA GTTTGAAGAA TCGATTCATG ATGTAGCTTT CCACCCATCC AAATGCTATA
2221TAGCCAGTGC TGGAGCTGAC GCACTGGCTA AAGTCTTTGT ATTGCCAACT TTCTTGTACA
2281AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2341AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2401AGGACGACAT CACATATAAA TGAGGACATG GACGCGTTAA GTCgacaatc aacctctgga
2461ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)