Construct: ORF TRCN0000478460

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007612.1_s317c1
Derived from:
ccsbBroadEn_05700
DNA Barcode:
CTCCCGCACATACTTGTAGAACAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CXorf40B (541578)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478460
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 541578 CXorf40B chromosome X open reading f... NM_001013845.2 100% 100%
2 human 541578 CXorf40B chromosome X open reading f... XM_005274698.2 100% 100%
3 human 541578 CXorf40B chromosome X open reading f... XM_005274699.2 100% 100%
4 human 541578 CXorf40B chromosome X open reading f... XM_005274700.2 100% 100%
5 human 541578 CXorf40B chromosome X open reading f... XM_005274701.3 100% 100%
6 human 541578 CXorf40B chromosome X open reading f... XM_005274702.3 100% 100%
7 human 541578 CXorf40B chromosome X open reading f... XM_006724826.3 100% 100%
8 human 541578 CXorf40B chromosome X open reading f... XM_011531180.2 100% 100%
9 human 541578 CXorf40B chromosome X open reading f... XM_017029585.2 100% 100%
10 human 541578 CXorf40B chromosome X open reading f... XM_017029586.2 100% 100%
11 human 541578 CXorf40B chromosome X open reading f... XM_017029588.2 100% 100%
12 human 541578 CXorf40B chromosome X open reading f... XM_017029589.1 100% 100%
13 human 91966 CXorf40A chromosome X open reading f... NM_001171907.3 99.3% 98.7% 87C>T;159G>T;335T>C
14 human 91966 CXorf40A chromosome X open reading f... NM_001171908.3 99.3% 98.7% 87C>T;159G>T;335T>C
15 human 91966 CXorf40A chromosome X open reading f... NM_001324274.2 99.3% 98.7% 87C>T;159G>T;335T>C
16 human 91966 CXorf40A chromosome X open reading f... NM_001324275.2 99.3% 98.7% 87C>T;159G>T;335T>C
17 human 91966 CXorf40A chromosome X open reading f... NM_001324277.2 99.3% 98.7% 87C>T;159G>T;335T>C
18 human 91966 CXorf40A chromosome X open reading f... NM_001324278.2 99.3% 98.7% 87C>T;159G>T;335T>C
19 human 91966 CXorf40A chromosome X open reading f... NM_001324280.2 99.3% 98.7% 87C>T;159G>T;335T>C
20 human 91966 CXorf40A chromosome X open reading f... NM_178124.6 99.3% 98.7% 87C>T;159G>T;335T>C
21 human 91966 CXorf40A chromosome X open reading f... XM_005262349.4 99.3% 98.7% 87C>T;159G>T;335T>C
22 human 541578 CXorf40B chromosome X open reading f... XM_011531181.3 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
23 human 541578 CXorf40B chromosome X open reading f... XM_017029590.2 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
24 human 541578 CXorf40B chromosome X open reading f... XM_017029591.2 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
25 human 541578 CXorf40B chromosome X open reading f... XM_017029592.2 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
26 human 541578 CXorf40B chromosome X open reading f... XM_017029593.2 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
27 human 541578 CXorf40B chromosome X open reading f... XM_024452391.1 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
28 human 91966 CXorf40A chromosome X open reading f... NM_001171909.3 91.3% 89.8% (many diffs)
29 human 91966 CXorf40A chromosome X open reading f... NM_001324276.2 91.3% 89.8% (many diffs)
30 human 91966 CXorf40A chromosome X open reading f... NM_001324279.2 91.3% 89.8% (many diffs)
31 human 91966 CXorf40A chromosome X open reading f... XM_024452480.1 91.3% 89.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
540
ORF length:
474
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gtttggctgc ctctccttcc ggcagcctta tgctggcttt gtcttaaatg
121gaatcaagac tgtggagacg cgctggcgtc cTCTGCTGAG CAGCCAGCGG AACTGTACCA
181TCGCCGTCCA CATTGCTCAC AGGGACTGGG AAGGCGATGC CTGTCGGGAG CTGCTGGTGG
241AGAGACTCGG GATGACTCCT GCTCAGATTC AGGCCTTGCT CAGGAAAGGG GAAAAGTTTG
301GTCGAGGAGT GATAGCGGGA CTCGTTGACA TTGGGGAAAC TTTGCAATGC CCCGAAGACT
361TAACTCCCGA TGAGGTTGTG GAACTAGAAA ATCAAGCTGC ACTGACCAAC CTGAAGCAGA
421AGTACCTGAC TGTGATTTCA AACCCCAGGT GGTTACTGGA GCCCATACCT AGGAAAGGAG
481GCAAGGATGT ATTCCAGGTA GACATCCCAG AGCACCTGAT CCCTTTGGGG CATGAAGTGT
541GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
601GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
661TTTATATATC TTGTGGAAAG GACGACTCCC GCACATACTT GTAGAACAGA CGCGTTAAGT
721Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)