Construct: ORF TRCN0000478711
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004725.1_s317c1
- Derived from:
- ccsbBroadEn_10626
- DNA Barcode:
- ACGTATTAACAGTGGTTGGTCGAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RPL13AP17 (399670)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478711
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 399670 | RPL13AP17 | ribosomal protein L13a pseu... | NR_003680.1 | 27.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 576
- ORF length:
- 510
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa ctcagtctct gtagtcatga tgctcacatc caagcccctg cacatcctag 121 gaagattcat cactaagcca ttactcttca ctaattccat ggaaaacttc gaactaactc 181 ctagcagaca tggccgtgtg caccatcaat catgtcatga agcacccagg acctacaagg 241 tggctgctga agacagcaga aagacagaac ctggtgcTCA GTGGCCAAGG CCATCTTGTG 301 GGCCACCCGG CAGCCATCTT GGCCAAGTGG GCTCTGCTGG GAAGGAAACT GGTGGTCGAG 361 CACCACGAGG GCATCAACAT TTCTGGCAAT TTCTGGAGAA ACAAATTAAA GTATCTGGCC 421 TTCCTCTACA AGCAGATGAG CACCAACCCT TCCCAAGGCC CGCCCGCCCC GCCATTCCTG 481 GGCCCCCAGC GCATCTTTTG GTGGCCTTGC AGAACCAAGT GGGGCCAGGC TGCCCTGGAC 541 CACCTTATGG TGTTTTATGG GATCTCACTG CCCTATGCCC AACTTTCTTG TACAAAGTGG 601 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 661 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 721 AACGTATTAA CAGTGGTTGG TCGAAACGCG TTAAGTCgac aatcaacctc tggattacaa 781 aatttgtgaa agatt