Construct: ORF TRCN0000478845

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002988.1_s317c1
Derived from:
ccsbBroadEn_08095
DNA Barcode:
TAGCACCCCTCGGCTAGGTAGCGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC27A6 (28965)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478845
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 28965 SLC27A6 solute carrier family 27 me... NM_001017372.3 99.7% 99.5% (many diffs)
2 human 28965 SLC27A6 solute carrier family 27 me... NM_001317984.1 99.7% 99.5% (many diffs)
3 human 28965 SLC27A6 solute carrier family 27 me... NM_014031.4 99.7% 99.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1923
ORF length:
1857
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct tctgtcatgg ctaacagttc taggggctgg aatggtcgtc ctgcacttcg
121tgcagaaact cctgttcact tacttttggg atgacttctg gttcgtgttg aaggtggtgc
181tcattataat tcggctgaag aagtacgaaa agagagggga gctggtgact gtgctggata
241aattcttgag tcatgccaaa agacaacctc ggaaaccttt catcatctat gagggagaca
301tctacaccta tcaggatgta gacaaaagga gcagcagagt ggcccatgtc ttcctgaacc
361attcctctct gaaaaagggg gacacggtgg ctctgctgat gagcaatgag ccggacttcg
421ttcacgtgtg gttcggcctc gccaagctgg gctgcgtggt ggcctttctc aacaccaaca
481ttcgctccaa ctccctcctg aattgcatcc gcgcctgtgg gcccagagcc ctagtggtgg
541gcgcagattt gcttgggacg gtagaagaaa tccttccaag cctctcagaa aatatcagtg
601tttgggggat gaaagattct gttccacaag gtgtaatttc actcaaagaa aaactgagca
661cctcacctga tgagcccgtg ccacgcagcc accatgttgt ctcactcatc aagtctactt
721gtctttacat ttttacctct ggaacaacag gtctaccaaa agcagctgtg attagtcagc
781tgcaggtttt aaggggttct gctgtcctgt gggcttttgg ttgtactgct catgacattg
841tttatataac ccttcctctg tatcatagtt cagcagctat cctgggaatt tctggatgtg
901ttgagttggg tgccacttgt gtgttaaaga agaaattttc agcaagccag ttttggagtg
961actgcaagaa gtatgatgtg actgtgtttc agtatattgg agaactttgt cgctaccttt
1021gcaaacaatc taagagagaa ggagaaaagg atcataaggt gcgtttggca attggaaatg
1081gcatacggag tgatgtatgg agagaatttt tagacagatt tggaaatata aaggtgtgtg
1141aactttatgc agctaccgaa tcaagcatat ctttcatgaa ctacactggg agaattggag
1201caattgggag aacaaatttg ttttacaaac ttctttccac ttttgactta ataaagtatg
1261actttcagaa agatgaaccc atgagaaatg agcagggttg gtgtattcat gtgaaaaaag
1321gagaacctgg acttctcatt tctcgagtga atgcaaaaaa tcccttcttt ggctatgctg
1381ggccttataa gcacacaaaa gacaaattgc tttgtgatgt ttttaagaag ggagatgttt
1441accttaatac tggagactta atagtccagg atcaggacaa tttcctttat ttttgggacc
1501gtactggaga cactttcaga tggaaaggag aaaatgtcgc aaccaCTGAG GTTGCTGATG
1561TTATTGGAAT GTTGGATTTC ATACAGGAAG CAAACGTCTA TGGTGTGGCT ATATCAGGTT
1621ATGAAGGAAG AGCAGGAATG GCTTCTATTA TTTTAAAACC AAATACATCT TTAGATTTGG
1681AAAAAGTTTA TGAACAAGTT GTAACATTTC TACCAGCTTA TGCTTGTCCA CGATTTTTAA
1741GAATTCAGGA AAAAATGGAA GCAACAGGAA CATTCAAACT ATTGAAGCAT CAGTTGGTGG
1801AAGATGGATT TAATCCACTG AAAATTTCTG AACCACTTTA CTTCATGGAT AACTTGAAAA
1861AGTCTTATGT TCTACTGACC AGGGAACTTT ATGATCAAAT AATGTTAGGG GAAATAAAAC
1921TTTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1981TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
2041GGCTTTATAT ATCTTGTGGA AAGGACGATA GCACCCCTCG GCTAGGTAGC GCACGCGTTA
2101AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)