Construct: ORF TRCN0000478949

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004372.1_s317c1
Derived from:
ccsbBroadEn_13509
DNA Barcode:
ACATTGTAGACCATCGCCGTCAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LINC00469 (283982)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478949
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283982 LINC00469 long intergenic non-protein... NR_027146.1 21.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
420
ORF length:
351
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttG TACAAAAAAG
61TTGGCACCAT GACGTCATCA GCACCCACCC TCCCAGATGT GACAATCAGA AATGTGTCCA
121GACATATCCA GATGTCCCTT ATGGGGAAGG GAGAATCGCC CTGGCTTTGC AGACTCCAGC
181TGGAACCCCT GCTGCAAGCG ATGGAGGAGC AACAGCTCGG CAATCTGGAG GCAAGGTGGG
241AGGTGGAGAA GCACGGAAAC GAAGTCTCTG GCTCAACCAG CAAAAGTGAA CCACTCCCCA
301GGTATTACCT TTATAATCAG ACAGAGCTTC AGGGAGCCCT GTGGAGTGGG CAGCATCCCC
361CAGAGGGCCA AGGGGAGATA TTCCAGACAG TCTTCCAGCA GAGAAGTTTG GGAAGATGCT
421TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
481GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
541TTTATATATC TTGTGGAAAG GACGAACATT GTAGACCATC GCCGTCAGCA CGCGTTAAGT
601Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)