Construct: ORF TRCN0000479232
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004879.1_s317c1
- Derived from:
- ccsbBroadEn_02044
- DNA Barcode:
- ATACAGAGGGCACATACTCATCAC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- EIF2S2 (8894)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479232
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 8894 | EIF2S2 | eukaryotic translation init... | NM_003908.5 | 100% | 100% | |
2 | human | 8894 | EIF2S2 | eukaryotic translation init... | NM_001316363.2 | 99% | 99% | 294_295insAAGGATCTT |
3 | human | 8894 | EIF2S2 | eukaryotic translation init... | XM_017028118.1 | 98.4% | 98.4% | 0_1insATGTCTGGGGACGAG |
4 | human | 8894 | EIF2S2 | eukaryotic translation init... | NM_001316364.2 | 94.2% | 94.2% | 683_684ins57 |
5 | mouse | 67204 | Eif2s2 | eukaryotic translation init... | NM_026030.2 | 92.1% | 95.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1065
- ORF length:
- 999
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttgccatgtc tggggacgag atgatttttg atcctactat gagcaagaag aaaaagaaga 121 agaagaagcc ttttatgtta gatgaggaag gggataccca aacagaggaa acccagcctt 181 cagaaacaaa agaagtggag ccagagccaa ctgaggacaa ggatttggaa gctgatgaag 241 aggacactag gaaaaaagat gcttctgatg atctagatga cttgaacttc tttaatcaaa 301 agaaaaagaa gaaaaaaact aaaaagatat ttgatattga tgaagctgaa gaaggtgtaa 361 aggatcttaa gattgaaagt gatgttcaag aaccaactga accagaggat gaccttgaca 421 ttatgcttgg caataaaaag aagaaaaaga agaatgttaa gttcccagat gaggatgaaa 481 tactagagaa agatgaagct ctagaagatg aagacaacaa aaaagatgat ggtatctcat 541 tcagtaatca gacaggccct gcttgggcag gctcagaaag agactacaca tacgaggagc 601 tgctgaatcg agtgttcaac atcatgaggg aaaagaatcc agatatggtt gctggggaga 661 aaaggaaatt tgtcatgaaa cctccacaag tcgtccgagt aggaaccaag aaaacttctt 721 ttgtcaactt tacagatatc tgtaaactat tacatcgtca gcccaaacat ctccttgcat 781 ttttgttggc tgaattgggt acaagtggtt ctatagatgg taataaccaa cttgtaatca 841 aaggaagatt ccaacagaaa cagatagaaa atgtcttgag aagatatatc aaggaatatg 901 tcacttgtca cacatgccga tcaccggaca caatcctgca gaaggacaca cgactctatt 961 tccTACAGTG CGAAACTTGT CATTCTAGAT GTTCTGTTGC CAGTATCAAA ACCGGCTTCC 1021 AGGCTGTCAC GGGCAAGCGA GCACAGCTCC GTGCCAAAGC TAACTAATTT GCTAATCACT 1081 GATTTTGCAA AGCTTGTTGT GGAGATGTGG CTGGACAGGT TTGCCATCAG AGTGGATATA 1141 CCGTTGTATT AAAAACAAGA TAAAAAAGCT GCCAAAAAAA AAAAAAAAAA AAACTCGAGG 1201 CATCTATGTC GGGTGCGGAG AAAGAGGTAA TGAAATGGCA CATGGTCATA GCTGTTTCCT 1261 GACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC 1321 GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG 1381 CTTTATATAT CTTGTGGAAA GGACGAATAC AGAGGGCACA TACTCATCAC ACGCGTTAAG 1441 TCgacaatca acctctggat tacaaaattt gtgaaagatt