Construct: ORF TRCN0000479259
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006054.1_s317c1
- Derived from:
- ccsbBroadEn_16064
- DNA Barcode:
- CCCCTACTTTCGTTTCAAAGTTAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EXOC3L4 (91828)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479259
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91828 | EXOC3L4 | exocyst complex component 3... | NM_001077594.1 | 99.7% | 99.7% | (many diffs) |
| 2 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537325.2 | 99.7% | 99.7% | (many diffs) |
| 3 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537327.2 | 99.7% | 99.7% | (many diffs) |
| 4 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537328.2 | 99.7% | 99.7% | (many diffs) |
| 5 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537329.2 | 99.7% | 99.7% | (many diffs) |
| 6 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537330.2 | 99.7% | 99.7% | (many diffs) |
| 7 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537331.1 | 99.7% | 99.7% | (many diffs) |
| 8 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537332.2 | 99.7% | 99.7% | (many diffs) |
| 9 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537333.2 | 94.9% | 94.8% | (many diffs) |
| 10 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537323.3 | 92.3% | 92.3% | (many diffs) |
| 11 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537324.2 | 91.5% | 91.5% | (many diffs) |
| 12 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XM_011537334.1 | 75% | 74.9% | (many diffs) |
| 13 | human | 91828 | EXOC3L4 | exocyst complex component 3... | XR_943558.2 | 65.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2235
- ORF length:
- 2166
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gccatcacca cagacagaca ctcctgggcc ggagctgcag agtcccaagg 121 aggctgagga gccacagact ccagctcagg gctcccggcg aacaagcagc aggaaagagc 181 ccaatgccca ccgcaaggat ggcacaaggc tgggcctggg ctccctgagg caggccttct 241 cccgggccag ccagcgggct ttgacccagg tctccaagga agatacgggc ctgttccggc 301 gaagctcctg ctccctgttc cggtccttcc ggcaagccct gaatgacggc ccagctaccg 361 gccattccca ggccactcct gaggtgccct cgggggtcat gaatggtgtc agccaacagg 421 catccactgg ggcagcgtct gaggaactga aacccgaggc agaaggcaaa tccgtggccg 481 acctcattac tgaacggcaa ctgctggcgg ccttcgaaca gcttctgcgc ctggagacgc 541 tgctggtggc cgagaaggcc tcgcgcacct ttgagcagga ccctacggcc ttcgcgcggc 601 gcgctatgga cgtgtgcctg ctttacgacg ggctggcagc cgagatcggc gccatcgtgc 661 gcgagacgct ggacagcgac ggtgtggacg cggccgcgct ggccgagctg gcccgcgtgg 721 tgagcgcgga ggaggaggcc cacccttctc cccccgacga cggcgacttc ctgcgcacgc 781 cgcgccgctg gcgccagcac tgggaggagg cggtgcggcg aagcgctcag gagcgcgtgc 841 ggcggccggg cgcggggtgg gccttcgggg aggcggaggg cgcgtcgggt ttggcccagc 901 ttctggccga gctgggtggc ttggttcgcc gcgacctgca gaaggtgcgg caggaggtgc 961 agcccgcgta tgcggcggcc ggcttcccag cgtgggaggt ctatctgcgt gccttccaca 1021 gcgccgtggc ccagcgcctc caggagctcg cgcgcgacgc ccgcggctgc gagcagctct 1081 atatcctgct ggactgggcc gccaacgtct acggcagtcc tgacttcctg ggcgccccgg 1141 ggctggcgct gcccgccgag ccgctgcctc cgctcctggc gccggacgtg tgggcccgac 1201 tggagagcga ctacaccagc ttcctggagg ccaagatcgc aagctgcttc gacagcatct 1261 tgcagctgga gcagagtcac tgggcggccg ccgaggtccc cgaggtgctg cagggcctct 1321 accaggcgcc gctgtccatg gacgtccata tgctcgtggc cgagcacgtg aaggcggccg 1381 gcgccatctc cgcggagctg gaggccacca ccctgcgaat ctgcacgcgg gcgctcggcc 1441 tcttcgtgcc caggtttgaa aaggcttttc tggcgtcgga ggcggtgagc gagccgcacc 1501 tgggcgccta catcaacgcc tgcgaggagc tcaggaccag tcttctctcc aggttcccag 1561 gaacccaaga ggagctggag aagcccctgg tgacggccac ctgcagcttc cagaagcact 1621 tgcttcaggg cttgcagcgt gagttgcagc cgctcttcag ggttgtgtgc accagggact 1681 ggctgacgca ggactggctg catcccctca tggacaaggt ggtgaccttc gccggtcatc 1741 tccagcgtgt ggcccggccg cgggcacagg agactctgca ggaggtgcac cggttcgtgg 1801 tccgcgagta cctggcgcgg gcgctgaggc cacgggagcg gttccggggc atggagcgca 1861 tgcatggctc ccagaagatg agcctggatg cccaggccat cagcgacacc ttccagggcc 1921 tgggttccga ggccacatgg ttggaccaag ccatccagtg cgtggctgag atcctgggcg 1981 agacctacaa agatgacatc cagcggcacc tggagactct taTCCGGAGC TACCCCGACA 2041 TCAGGCGGGA CCACATACTG GCCATTCTGG CGCTGCGCCG ACTGGGCCGC CGGCGGAACC 2101 AGCATCTCTT GCAGCACACC GAAGACCTGC TGAGAGCTGC GGCCGGGGCG GCGGGTGCGG 2161 AGGCCCCTCG GGGCCGCGTG CTCTTCGAGG AGATCAAGGT GCCCAGTGCC ATGGCTGTGC 2221 TGATCACCTG CGTCTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 2281 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 2341 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CCCCTACTTT CGTTTCAAAG 2401 TTACACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt