Construct: ORF TRCN0000479267
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015558.1_s317c1
- Derived from:
- ccsbBroadEn_14435
- DNA Barcode:
- GAAGCAGTCACTGTACTAATAATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SAMD9L (219285)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479267
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_001303496.3 | 79.9% | 79.2% | (many diffs) |
| 2 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_001303497.3 | 79.9% | 79.2% | (many diffs) |
| 3 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_001303498.3 | 79.9% | 79.2% | (many diffs) |
| 4 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_001303500.3 | 79.9% | 79.2% | (many diffs) |
| 5 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_001350082.2 | 79.9% | 79.2% | (many diffs) |
| 6 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_001350083.2 | 79.9% | 79.2% | (many diffs) |
| 7 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_001350084.2 | 79.9% | 79.2% | (many diffs) |
| 8 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_001350085.2 | 79.9% | 79.2% | (many diffs) |
| 9 | human | 219285 | SAMD9L | sterile alpha motif domain ... | NM_152703.5 | 79.9% | 79.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3873
- ORF length:
- 3804
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gagtaaacca gtatctctac ctgaaatgat taaagactgg accaaagagc 121 atgtgaaaaa atgggtaaat gaagacctta agattaatga gcaatacggg caaattctgc 181 tcagtgaaga agtaacagga ttagtcctgc aggaattaac tgagaaggac cttgtagaaa 241 tggggctacc atggggtcca gcacttttga taaaacgttc atacaacaaa ttgaatagta 301 agtcccctga aagtgacaat catgatccgg gacaattaga taattcaaaa ccgtccaaaa 361 cagaacacca gaaaaatcca aaacacacca aaaaggaaga agaaaattca atgtcatcta 421 atattgatta tgatcccaga gagatcagag atatcaaaca agaagaatca attcttatga 481 aagaaaatgt gttagatgaa gtagcaaatg ctaaacacaa gaaaaagtgt aagctaaaac 541 ctgaacaatt gacttgtatg ccatatcctt ttgatcagtt ccatgacagc catcgctaca 601 tagaacatta tactctacaa cctgaaacag gagcactcaa tctcattgat ccaatacatg 661 agttcaaagc tctcacaaac acagaaacag ccacggaagt ggacattaag atgaaattca 721 gcaatgaagt cttccgattt gcatcagctt gtatgaattc acgcaccaat ggcaccatcc 781 attttggagt caaggacaaa ccccatggag aaattgttgg tgtgaaaatc accagtaagg 841 ctgccttcat tgaccacttc aatgtaatga tcaaaaagta ttttgaagaa agtgagatca 901 atgaagccaa gaagtgtatt cgggagccaa ggtttgtgga agtccttctg cagaacaata 961 caccatctga cagatttgtc attgaagttg atactattcc aaaacactct atatgtaatg 1021 ataagtattt ctacattcag atgcaaattt gtaaagataa aatatggaaa caaaaccaaa 1081 atctttcact gtttgtaaga gaaggggcta gctctaggga tatcctggcc aattccaagc 1141 aacgggatgt agatttcaag gcatttttac aaaatttaaa gtcactggta gcatctagaa 1201 aagaggctga agaagagtat ggaatgaagg caatgaagaa ggagagtgaa ggactaaagc 1261 tggttaaact tctcatagga aaccgagact cactggataa ttcatactat gactggtaca 1321 ttcttgtaac aaataaatgc catccaaacc aaataaagca cttagatttt ttaaaagaaa 1381 ttaaatggtt tgctgtgttg gagtttgatc ctgaatctat gatcaatgga gtggtcaaag 1441 cttacaaaga aagtcgggtg gcaaaccttc actttccaaa tcaatatgaa gacaagacaa 1501 ctaacatgtg ggagaagatt tctactctta atctttacca acagcccagc tggattttct 1561 gcaacggcag atcagacctg aaaagcgaga catataaacc tctagaacca catttatggc 1621 agagagaaag agcttcagaa gtcaggaaac taattttatt tctcacagat gaaaatataa 1681 tgacaagagg aaaatttttg gtagtgtttc tattactctc ttcagtggaa agcccaggag 1741 atccactcat tgaaactttc tgggctttct atcaagctct caaaggaatg gaaaatatgt 1801 tgtgtatctc tgtaaactca catatttatc aacgatggaa agatctacta caaacaagaa 1861 tgaagatgga agatgaacta acaaaccaca gtatttccac tttaaatata gaactggtaa 1921 acagcactat ccttaaacta aaatcggtga ctcggtcatc aagaaggttt ttgcccgccc 1981 gtggatcttc ttcagttatc ctagagaaaa agaaagagga tgtcttgact gcactggaaa 2041 tcctctgtga aaatgagtgt acagagacag acatcgagaa agacaaatct aaattcctgg 2101 agtttaagaa atcaaaagaa gaacactttt atcgaggtgg caaagtatcc tggtggaact 2161 tctatttttc ttctgaaaac tattcttcag attttgttaa aagggacagt tatgaaaagc 2221 ttaaagattt aatacactgc tgggcagagt ctcctaaacc aatatttgca aaaatcatca 2281 atctttatca tcatccaggc tgtggaggta ccacactggc tatgcatgtt ctctgggact 2341 taaagaaaaa cttcagatgt gctgtgttaa aaaacaagac aactgatttt gcagaaattg 2401 cagagcaagt gatcaatctg gtcacctata gggcaaagag caatcaggat tacattcctg 2461 tgcttctcct tgtggatgat tttgaagaac aagaaaatgt ctactttcta caaaatgcca 2521 tccattccgt tttagcagaa aaggatttgc gatatgaaaa aacattggta attatcttaa 2581 actgcatgag atcccggaat ccagatgaaa gtgcaaaatt ggcagacagt attgcactaa 2641 attaccaact ttcttccaag gaacaaagag cttttggtgc caaactgaag gaaattgaaa 2701 agcagcacaa gaactgtgaa aacttttatt ccttcatgat catgaaaagc aattttgatg 2761 aaacatatat agaaaatgta gtcaggaata tcctaaaagg acaggatgtt gacagcaagg 2821 aagcacaact catttccttc ctggctttac tcagctctta tgttactgac tctacaattt 2881 cagtttcaca gtgtgaaata tttttgggaa tcatatacac tagtacaccc tgggaacctg 2941 aaagcttaga agacaagatg ggaacttatt ctacacttct aataaaaaca gaagttgcag 3001 aatatgggag atacacaggt gtgcgtatca ttcaccctct gattgccctg tactgtctaa 3061 aagaactgga aagaagctat cacttggata aatgtcaaat tgcattgaat atattagaag 3121 agaatttatt ctatgattct ggaataggaa gagacaaatt tcaacatgat gttcaaactc 3181 ttctgcttac aagacagcgc aaggtgtatg gagatgaaac agacactctg ttttccccat 3241 taatggaagc tttacagaat aaagacattg aaaaggtctt gagtgcagga agtagacgat 3301 tcccacaaaa tgcattcatt tgtcaagcct tagcaagaca tttctacatt aaagagaagg 3361 actttaacac agctctggac tgggcacgtc aggccaaaat gaaagcacct aaaaattcct 3421 atatttcaga tacactaggt caagtctaca aaagtgaaat caaatggtgg ttggatggga 3481 acaaaaactg taggagcatt actgttaatg acctaacaca tctcctagaa gctgcggaaa 3541 aagcctcaag agctttcaaa gaaTCCCAAA GGCAAACTGA TAGTAAAAAC TATGAAACCG 3601 AGAACTGGTC ACCACAGAAG TCCCAGAGAC GATATGACAT GTATAACACA GCTTGTTTCT 3661 TGGGTGAAAT AGAAGTTGGT CTTTACACTA TCCAGATTCT TCAGCTCACT CCCTTTTTCC 3721 ACAAAGAAAA TGAATTATCC AAAAAACATA TGGTGCAATT TTTATCAGGA AAGTGGACCA 3781 TTCCTCCTGA TCCCAGAAAT GAATGTTATT TGGCTCTTAG CAAGTTCACA TCCCACCTAA 3841 AAAAATTTAC AATCAGATCT GAAAAGGTGC TTTTGCCAAC TTTCTTGTAC AAAGTGGTTG 3901 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 3961 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGA 4021 AGCAGTCACT GTACTAATAA TCACGCGTTA AGTCgacaat caacctctgg attacaaaat 4081 ttgtgaaaga tt