Construct: ORF TRCN0000479481

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012119.1_s317c1
Derived from:
ccsbBroadEn_04566
DNA Barcode:
AAGTGCCGTGGGACCCATAGTGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CXorf40A (91966)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479481
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91966 CXorf40A chromosome X open reading f... NM_001171907.3 100% 100%
2 human 91966 CXorf40A chromosome X open reading f... NM_001171908.3 100% 100%
3 human 91966 CXorf40A chromosome X open reading f... NM_001324274.2 100% 100%
4 human 91966 CXorf40A chromosome X open reading f... NM_001324275.2 100% 100%
5 human 91966 CXorf40A chromosome X open reading f... NM_001324277.2 100% 100%
6 human 91966 CXorf40A chromosome X open reading f... NM_001324278.2 100% 100%
7 human 91966 CXorf40A chromosome X open reading f... NM_001324280.2 100% 100%
8 human 91966 CXorf40A chromosome X open reading f... NM_178124.6 100% 100%
9 human 91966 CXorf40A chromosome X open reading f... XM_005262349.4 100% 100%
10 human 541578 CXorf40B chromosome X open reading f... NM_001013845.2 99.3% 98.7% 87T>C;159T>G;335C>T
11 human 541578 CXorf40B chromosome X open reading f... XM_005274698.2 99.3% 98.7% 87T>C;159T>G;335C>T
12 human 541578 CXorf40B chromosome X open reading f... XM_005274699.2 99.3% 98.7% 87T>C;159T>G;335C>T
13 human 541578 CXorf40B chromosome X open reading f... XM_005274700.2 99.3% 98.7% 87T>C;159T>G;335C>T
14 human 541578 CXorf40B chromosome X open reading f... XM_005274701.3 99.3% 98.7% 87T>C;159T>G;335C>T
15 human 541578 CXorf40B chromosome X open reading f... XM_005274702.3 99.3% 98.7% 87T>C;159T>G;335C>T
16 human 541578 CXorf40B chromosome X open reading f... XM_006724826.3 99.3% 98.7% 87T>C;159T>G;335C>T
17 human 541578 CXorf40B chromosome X open reading f... XM_011531180.2 99.3% 98.7% 87T>C;159T>G;335C>T
18 human 541578 CXorf40B chromosome X open reading f... XM_017029585.2 99.3% 98.7% 87T>C;159T>G;335C>T
19 human 541578 CXorf40B chromosome X open reading f... XM_017029586.2 99.3% 98.7% 87T>C;159T>G;335C>T
20 human 541578 CXorf40B chromosome X open reading f... XM_017029588.2 99.3% 98.7% 87T>C;159T>G;335C>T
21 human 541578 CXorf40B chromosome X open reading f... XM_017029589.1 99.3% 98.7% 87T>C;159T>G;335C>T
22 human 91966 CXorf40A chromosome X open reading f... NM_001171909.3 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
23 human 91966 CXorf40A chromosome X open reading f... NM_001324276.2 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
24 human 91966 CXorf40A chromosome X open reading f... NM_001324279.2 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
25 human 91966 CXorf40A chromosome X open reading f... XM_024452480.1 91.9% 91.1% 433_433delAinsGTAGAC;438_438delAins32
26 human 541578 CXorf40B chromosome X open reading f... XM_011531181.3 91.3% 89.8% (many diffs)
27 human 541578 CXorf40B chromosome X open reading f... XM_017029590.2 91.3% 89.8% (many diffs)
28 human 541578 CXorf40B chromosome X open reading f... XM_017029591.2 91.3% 89.8% (many diffs)
29 human 541578 CXorf40B chromosome X open reading f... XM_017029592.2 91.3% 89.8% (many diffs)
30 human 541578 CXorf40B chromosome X open reading f... XM_017029593.2 91.3% 89.8% (many diffs)
31 human 541578 CXorf40B chromosome X open reading f... XM_024452391.1 91.3% 89.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
540
ORF length:
474
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gtttggctgc ctctccttcc ggcagcctta tgctggcttt gtcttaaatg
121gaatcaagac tgtggagacg cgctggcgtc ccctgctgag cagccagcgg aactgtacca
181tcgccgtcca cattgctcac agggactggg aaggcgatgc ctggcgggag ctgctggtgg
241agagactcgg gatgactcct gctcagattc aggCCTTGCT CAGGAAAGGG GAAAAGTTTG
301GTCGAGGAGT GATAGCGGGA CTCGTTGACA TTGGGGAAAC TTTGCAATGC CCCGAAGACT
361TAACTCCCGA TGAGGTTGTG GAACTAGAAA ATCAAGCTGT ACTGACCAAC CTGAAGCAGA
421AGTACCTGAC TGTGATTTCA AACCCCAGGT GGTTACTGGA GCCCATACCT AGGAAAGGAG
481GCAAGGATGT ATTCCAGGTA GACATCCCAG AGCACCTGAT CCCTTTGGGG CATGAAGTGT
541GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
601GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
661TTTATATATC TTGTGGAAAG GACGAAAGTG CCGTGGGACC CATAGTGGAA CGCGTTAAGT
721Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)