Construct: ORF TRCN0000479505

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003486.1_s317c1
Derived from:
ccsbBroadEn_03761
DNA Barcode:
TACCGGACATGCTCACTGTGCGAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LHX9 (56956)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479505
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56956 LHX9 LIM homeobox 9 NM_020204.3 100% 100%
2 human 56956 LHX9 LIM homeobox 9 NM_001014434.1 96.7% 95.9% (many diffs)
3 human 56956 LHX9 LIM homeobox 9 XM_017001849.1 95.2% 95.2% 0_1ins57
4 human 56956 LHX9 LIM homeobox 9 XM_011509781.2 94.7% 93.8% (many diffs)
5 human 56956 LHX9 LIM homeobox 9 NM_001370213.1 79% 77.9% (many diffs)
6 human 56956 LHX9 LIM homeobox 9 XM_005245350.3 74.5% 72.5% (many diffs)
7 mouse 16876 Lhx9 LIM homeobox protein 9 NM_001042577.1 94.7% 98.4% (many diffs)
8 mouse 16876 Lhx9 LIM homeobox protein 9 XM_006529170.3 94.4% 98.2% (many diffs)
9 mouse 16876 Lhx9 LIM homeobox protein 9 XM_006529171.2 91.7% 94.7% (many diffs)
10 mouse 16876 Lhx9 LIM homeobox protein 9 XM_006529172.3 91.7% 94.7% (many diffs)
11 mouse 16876 Lhx9 LIM homeobox protein 9 XM_006529173.3 91.7% 94.7% (many diffs)
12 mouse 16876 Lhx9 LIM homeobox protein 9 XM_017318628.1 91.7% 94.7% (many diffs)
13 mouse 16876 Lhx9 LIM homeobox protein 9 NM_001025565.2 74.3% 77.2% (many diffs)
14 mouse 16876 Lhx9 LIM homeobox protein 9 NM_010714.3 71.4% 73.5% (many diffs)
15 mouse 16876 Lhx9 LIM homeobox protein 9 XM_017318637.1 71.4% 73.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1260
ORF length:
1191
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaaatagtg gggtgccgag cagaagacaa ctcgtgtcct ttccgccccc
121cagccatgct ctttcacggg atctccggag gccacatcca aggcatcatg gaggagatgg
181agcgcagatc caagactgag gcccgtctgg ccaaaggcgc ccagctcaac ggccgcgacg
241cgggcatgcc cccgctcagc ccggagaagc ccgccctgtg cgccggctgc gggggcaaga
301tctcggacag gtactatctg ctggctgtgg acaaacagtg gcatctgaga tgcctgaagt
361gctgtgaatg taagctggcc ctcgagtccg agctcacctg ctttgccaag gacggtagca
421tttactgcaa ggaggattac tacagaaggt tctctgtgca gagatgtgcc cgctgccacc
481ttggcatttc cgcctcggag atggtcatgc gcgcccgaga ctctgtctac cacctgagct
541gcttcacctg ctccacttgc aacaagactc tgaccacggg cgaccatttc ggcatgaagg
601acagcctggt gtactgccgc gcccacttcg agaccctctt gcaaggagag tatccaccgc
661agctgagcta cacggagctg gcggccaaga gcggcggcct ggccctgcct tacttcaacg
721gtacgggcac cgtgcagaaa gggcggcccc ggaagcggaa gagcccagcg ctgggagtgg
781acatcgtcaa ttacaactca ggttgtaatg agaatgaggc agaccacttg gaccgggacc
841agcagcctta tccaccctcg cagaagacca agcgcatgcg aacctctttc aagcatcacc
901agctccggac catgaaatcc tactttgcca tcaaccacaa cccggatgcc aaggaccTCA
961AGCAGCTTGC CCAGAAAACA GGTCTGACCA AAAGAGTTTT GCAGGTTTGG TTCCAAAACG
1021CACGAGCCAA ATTCAGAAGG AACCTTTTGC GGCAGGAGAA TGGGGGTGTT GATAAAGCTG
1081ACGGCACGTC GCTTCCGGCC CCGCCCTCAG CAGACAGCGG AGCTCTCACT CCACCCGGCA
1141CTGCGACCAC TTTAACAGAC CTGACCAATC CCACTATCAC TGTAGTGACA TCCGTGACCT
1201CTAACATGGA CAGCCACGAA TCCGGAAGCC CCTCACAAAC TACCTTAACA AACCTTTTCT
1261TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1321GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1381TTTATATATC TTGTGGAAAG GACGATACCG GACATGCTCA CTGTGCGAAA CGCGTTAAGT
1441Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)