Construct: ORF TRCN0000479505
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003486.1_s317c1
- Derived from:
- ccsbBroadEn_03761
- DNA Barcode:
- TACCGGACATGCTCACTGTGCGAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LHX9 (56956)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479505
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 56956 | LHX9 | LIM homeobox 9 | NM_020204.3 | 100% | 100% | |
2 | human | 56956 | LHX9 | LIM homeobox 9 | NM_001014434.1 | 96.7% | 95.9% | (many diffs) |
3 | human | 56956 | LHX9 | LIM homeobox 9 | XM_017001849.1 | 95.2% | 95.2% | 0_1ins57 |
4 | human | 56956 | LHX9 | LIM homeobox 9 | XM_011509781.2 | 94.7% | 93.8% | (many diffs) |
5 | human | 56956 | LHX9 | LIM homeobox 9 | NM_001370213.1 | 79% | 77.9% | (many diffs) |
6 | human | 56956 | LHX9 | LIM homeobox 9 | XM_005245350.3 | 74.5% | 72.5% | (many diffs) |
7 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | NM_001042577.1 | 94.7% | 98.4% | (many diffs) |
8 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | XM_006529170.3 | 94.4% | 98.2% | (many diffs) |
9 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | XM_006529171.2 | 91.7% | 94.7% | (many diffs) |
10 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | XM_006529172.3 | 91.7% | 94.7% | (many diffs) |
11 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | XM_006529173.3 | 91.7% | 94.7% | (many diffs) |
12 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | XM_017318628.1 | 91.7% | 94.7% | (many diffs) |
13 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | NM_001025565.2 | 74.3% | 77.2% | (many diffs) |
14 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | NM_010714.3 | 71.4% | 73.5% | (many diffs) |
15 | mouse | 16876 | Lhx9 | LIM homeobox protein 9 | XM_017318637.1 | 71.4% | 73.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1260
- ORF length:
- 1191
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggaaatagtg gggtgccgag cagaagacaa ctcgtgtcct ttccgccccc 121 cagccatgct ctttcacggg atctccggag gccacatcca aggcatcatg gaggagatgg 181 agcgcagatc caagactgag gcccgtctgg ccaaaggcgc ccagctcaac ggccgcgacg 241 cgggcatgcc cccgctcagc ccggagaagc ccgccctgtg cgccggctgc gggggcaaga 301 tctcggacag gtactatctg ctggctgtgg acaaacagtg gcatctgaga tgcctgaagt 361 gctgtgaatg taagctggcc ctcgagtccg agctcacctg ctttgccaag gacggtagca 421 tttactgcaa ggaggattac tacagaaggt tctctgtgca gagatgtgcc cgctgccacc 481 ttggcatttc cgcctcggag atggtcatgc gcgcccgaga ctctgtctac cacctgagct 541 gcttcacctg ctccacttgc aacaagactc tgaccacggg cgaccatttc ggcatgaagg 601 acagcctggt gtactgccgc gcccacttcg agaccctctt gcaaggagag tatccaccgc 661 agctgagcta cacggagctg gcggccaaga gcggcggcct ggccctgcct tacttcaacg 721 gtacgggcac cgtgcagaaa gggcggcccc ggaagcggaa gagcccagcg ctgggagtgg 781 acatcgtcaa ttacaactca ggttgtaatg agaatgaggc agaccacttg gaccgggacc 841 agcagcctta tccaccctcg cagaagacca agcgcatgcg aacctctttc aagcatcacc 901 agctccggac catgaaatcc tactttgcca tcaaccacaa cccggatgcc aaggaccTCA 961 AGCAGCTTGC CCAGAAAACA GGTCTGACCA AAAGAGTTTT GCAGGTTTGG TTCCAAAACG 1021 CACGAGCCAA ATTCAGAAGG AACCTTTTGC GGCAGGAGAA TGGGGGTGTT GATAAAGCTG 1081 ACGGCACGTC GCTTCCGGCC CCGCCCTCAG CAGACAGCGG AGCTCTCACT CCACCCGGCA 1141 CTGCGACCAC TTTAACAGAC CTGACCAATC CCACTATCAC TGTAGTGACA TCCGTGACCT 1201 CTAACATGGA CAGCCACGAA TCCGGAAGCC CCTCACAAAC TACCTTAACA AACCTTTTCT 1261 TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 1321 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 1381 TTTATATATC TTGTGGAAAG GACGATACCG GACATGCTCA CTGTGCGAAA CGCGTTAAGT 1441 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt