Transcript: Human NM_020204.3

Homo sapiens LIM homeobox 9 (LHX9), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
LHX9 (56956)
Length:
7865
CDS:
453..1646

Additional Resources:

NCBI RefSeq record:
NM_020204.3
NBCI Gene record:
LHX9 (56956)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020204.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427556 TGCCAAGGACGGTAGCATTTA pLKO_005 788 CDS 100% 13.200 18.480 N LHX9 n/a
2 TRCN0000016715 CCGGACCATGAAATCCTACTT pLKO.1 1289 CDS 100% 4.950 3.960 N LHX9 n/a
3 TRCN0000433659 CACTATTAGGTTATGATAATC pLKO_005 4419 3UTR 100% 13.200 9.240 N Lhx9 n/a
4 TRCN0000420456 GCAATTGTATGTGTGATTATG pLKO_005 2082 3UTR 100% 13.200 9.240 N LHX9 n/a
5 TRCN0000413686 AGATCTCGGACAGGTACTATC pLKO_005 682 CDS 100% 10.800 7.560 N LHX9 n/a
6 TRCN0000016713 CCTCACAAACTACCTTAACAA pLKO.1 1615 CDS 100% 5.625 3.938 N LHX9 n/a
7 TRCN0000070583 CGGACCATGAAATCCTACTTT pLKO.1 1290 CDS 100% 5.625 3.938 N Lhx9 n/a
8 TRCN0000016714 GCAAGGAGGATTACTACAGAA pLKO.1 811 CDS 100% 4.950 3.465 N LHX9 n/a
9 TRCN0000016716 GCCAAATTCAGAAGGAACCTT pLKO.1 1410 CDS 100% 3.000 2.100 N LHX9 n/a
10 TRCN0000016717 CCACTTTAACAGACCTGACCA pLKO.1 1531 CDS 100% 2.640 1.848 N LHX9 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020204.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03761 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03761 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479505 TACCGGACATGCTCACTGTGCGAA pLX_317 25.7% 100% 100% V5 n/a
Download CSV