Construct: ORF TRCN0000479527

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016010.1_s317c1
Derived from:
ccsbBroadEn_12915
DNA Barcode:
AGAAGGCACGCTTCAGCCGCGCCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZFHX2 (85446)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479527
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 85446 ZFHX2 zinc finger homeobox 2 XM_017021715.2 15.5% 14.1% (many diffs)
2 human 85446 ZFHX2 zinc finger homeobox 2 NM_033400.3 15.4% 14% (many diffs)
3 human 85446 ZFHX2 zinc finger homeobox 2 XM_011537245.3 15.4% 14% (many diffs)
4 human 85446 ZFHX2 zinc finger homeobox 2 XM_011537246.3 15.4% 14% (many diffs)
5 human 85446 ZFHX2 zinc finger homeobox 2 XM_011537247.2 15.4% 14% (many diffs)
6 human 85446 ZFHX2 zinc finger homeobox 2 XM_017021714.1 15.4% 14% (many diffs)
7 human 85446 ZFHX2 zinc finger homeobox 2 XM_017021716.2 15.3% 14% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1293
ORF length:
1224
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggccaccctt aactcagcct ctaccactgg taccaccccc tcccctgggc
121acaatgcccc gtccctgcct tcggacacct tctcctccag caccccctct gatcctgtca
181ccaaagatcc ccctgctgcc tcctccacct ctgagaacat gaggtcctca gagccagggg
241gacagctcct ggagtcgggc tgtggcctcg tcccaccaaa ggagattggg gagccccagg
301aagggcctga ctgtggtcac ttcccaccaa atgacccagg ggtggaaaag gacaaggagc
361aggaggagga agaagaaggg ctccctccca tggacctaag caaccactta ttcttcacag
421ctggaggtga ggcctaccta gtggccaagc tgtccctgcc aggtggcagt gaactcctgt
481taccaaaggg cttcccctgg ggtgaggcgg gcatcaagga agagcccagt ctgcccttcc
541ttgcctaccc acccccctca cacctcactg cccttcacat ccaacatggc tttgacccaa
601tccaaggctt tagctcttct gaccaaattc tgtcccatga tacctcagca ccatctccgg
661ctgcctgtga ggaaaggcat ggagctttct ggagctacca gctggctcca aatccacccg
721gagatcccaa agatggcccc atggggaaca gcgggggcaa ccacgtggcg gtcttctggc
781tctgccttct gtgccgcctg ggtttcagca agccccaggc ctttatggat cacacacagt
841ctcatggggt gaagctaacc cctgcccaat atcagggcct gtcaggtagc ccagctgtac
901tccaggaggg agatgaaggc tgcaaggccc tcataagctt tctGGAGCCA AAACTCCCTG
961CTCGCCCCTC TTCTGACATA CCCCTTGACA ACAGCAGCAC AGTGAACATG GAGGCGAATG
1021TGGCCCAGAC AGAGGATGGC CCCCCTGAGG CAGAAGTCCA GGCCCTTATC CTCCTGGATG
1081AAGAAGTTAT GGCCCTCAGC CCACCCTCTC CACCCACAGC CACCTGGGGC TATACCACTG
1141CCTGTTGTGT GCGTGGGAGA CACCCTCCCG CTTGGCTGTG CTGCAACACC TGCGCACACC
1201TGCCCACCGC GATGCCCAGG CCCAGAGGCG TCTGCAGCTG CTACAGAATG GCCCAACCAC
1261TGAGGAAGGA CTCGCAGCTC TTCAGAGCAT CCTTGCCAAC TTTCTTGTAC AAAGTGGTTG
1321ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1381GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAG
1441AAGGCACGCT TCAGCCGCGC CGACGCGTTA AGTCgacaat caacctctgg attacaaaat
1501ttgtgaaaga tt

Download FASTA (ORF) (Full)