Construct: ORF TRCN0000479568

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007675.1_s317c1
Derived from:
ccsbBroadEn_13052
DNA Barcode:
TTAGACATAACAGTTCAAAAAAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC6 (319089)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479568
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 319089 TTC6 tetratricopeptide repeat do... NM_001368142.1 81.5% 81.5% 1_51del;356_357ins291
2 human 319089 TTC6 tetratricopeptide repeat do... XM_011537431.2 45.3% 45.3% 1_2145del;2601_2624del
3 human 319089 TTC6 tetratricopeptide repeat do... XM_011537430.2 41.9% 41.9% 1_2463del;2919_2942del
4 human 319089 TTC6 tetratricopeptide repeat do... XM_017021256.1 38% 38% 1_2907del;3363_3386del
5 human 319089 TTC6 tetratricopeptide repeat do... NM_001310135.2 31.5% 31.5% 1_3906del
6 human 319089 TTC6 tetratricopeptide repeat do... XM_024449560.1 31.4% 31.4% 1_3906del;4362_4385del
7 human 319089 TTC6 tetratricopeptide repeat do... XM_017021254.1 28.9% 28.9% 1_3906del;4211_4212ins150
8 human 319089 TTC6 tetratricopeptide repeat do... XM_017021255.1 26.5% 26.5% 1_3906del;4075_4076ins285
9 human 319089 TTC6 tetratricopeptide repeat do... XR_943762.2 25.8% 1_4763del;6202_6422del;6785_6951del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1869
ORF length:
1800
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggacaaaggt ctcagtgagt tgagtcctat gcagcaagcc cttatttatt
121cattttgtga aaaccatgac aaggccattg aggtcttgga cggaatcagc tggaatagag
181ctgagatgac catgtgtgct ctattagcaa aagttcaaat gaaggccaag agaaccaagg
241aagctgtgga agtgcttaag aaggctttgg atgccatttc tcattctgat aaaggaccag
301atgccacagc aatttcagca gactgtctgt ataacttggg tctttgttac atggaggaag
361gcaatttaca aatggctttt gattctttta caaaagctgt gaaagcaaat ccagattttg
421cagaaagctt ttatcagcga gggctttgta aagtgaaact ccacaaggat agctcgattc
481tggattttaa tcgtgcaatt accctcaatc caaaacatta ccaggcatat ttaagccgag
541tagcattcta tggtttaaaa ggcaggtatt ccaaagcaat cttgaattgt aacaaggcta
601ttaaaattta ccctgaaagc gtacgtgcct atctctacag aggagttctg aaatactaca
661acaagactta taagctagca attacagatt taactacagc tatcagcatg gacaaaaata
721gttatacagc attttataac agagcattat gttacaccaa gataagggaa cttcaaatgg
781cattaacaga ttatggaatt gtgctgcttc ttgatgctac agaaactgta aaactaaata
841ccttccttaa tcgtggactc atctacgtag aactaggcca gtatggcttt gcactagagg
901attttaaaca agctgcactg ataagccgga ctaacgggag cctttgtcac gccactgcca
961tgtgccatca cagaattaat gagtttgaag aagctgtcaa tttctttact tgggctctta
1021aaattaaccc atgttttctg gatgcttatg ttggacgggg aaattcttac atggaatacg
1081gtcatgatga agccaccaag caagcacaga aagactttct gaaagcactg catattaatc
1141cagcatacat aaaagccaga attagttttg gctataattt gcaggcccaa ggaaaattcc
1201agaaagcttg gaaccacttt accattgcca tagatactga tccaaagaac tacctagcct
1261atgaaggaag agctgtggtc tgtcttcaga tgggtaataa ttttgctgca atgcaggata
1321ttaatgctgc catgaagatc agtactacag cagaattctt aacaaatcgt ggggtgattc
1381atgagtttat gggccacaaa cagaatgcaa tgaaagacta ccaagatgca attactctaa
1441accccaagta ctcgctggct tactttaatg caggaaatat ctactttcac cacaggcagt
1501tttCCCAGGC CAGTGACTAC TTCTCAAAAG CTTTAAAATT TGATCCAGAA AATGAATATG
1561TTCTCATGAA TCGAGCTATT ACAAATACAA TATTAAAGAA ATATGAAGAA GCAAAAGAAG
1621ATTTTGCAAA TGTAATTGAA AGCTGTCCCT TTTGGGCTGC AGTATATTTT AATAGAGCAC
1681ATTTCTACTA CTGCTTAAAG CAATATGAAC TAGCTGAGGA AGACCTTAAT AAAGCCCTGT
1741CTTTGAAGCC TAATGATGCT CTAGTATATA ATTTTAGAGC AAAAGTTCGT GGTAAAATAG
1801GTCTGATTGA GGAAGCTATG GCTGACTATA ACCAAGCACT TGATCTTGAA GACTATGCCT
1861CAGTTATATT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1921CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1981TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATTAGAC ATAACAGTTC AAAAAAGCAC
2041GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)