Construct: ORF TRCN0000479636

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006909.1_s317c1
Derived from:
ccsbBroadEn_06679
DNA Barcode:
CATGCCAAATCCGCAGCCTGCCAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
OXTR (5021)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479636
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5021 OXTR oxytocin receptor NM_000916.3 99.8% 100% 171C>T;690C>T
2 human 5021 OXTR oxytocin receptor NM_001354653.1 99.8% 100% 171C>T;690C>T
3 human 5021 OXTR oxytocin receptor NM_001354654.1 99.8% 100% 171C>T;690C>T
4 human 5021 OXTR oxytocin receptor NM_001354655.1 99.8% 100% 171C>T;690C>T
5 human 5021 OXTR oxytocin receptor NM_001354656.2 99.8% 100% 171C>T;690C>T
6 mouse 18430 Oxtr oxytocin receptor NM_001081147.1 86.8% 92% (many diffs)
7 mouse 18430 Oxtr oxytocin receptor XM_006505723.1 86.8% 92% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1236
ORF length:
1167
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggagggcgcg ctcgcagcca actggagcgc cgaggcagcc aacgccagcg
121ccgcgccgcc gggggccgag ggcaaccgca ccgccggacc cccgcggcgc aacgaggccc
181tggcgcgcgt ggaggtggcg gtgctgtgtc tcatcctgct cctggcgctg agcgggaatg
241cgtgtgtgct gctggcgctg cgcaccacac gccagaagca ctcgcgcctc ttcttcttca
301tgaagcacct aagcatcgcc gacctggtgg tggcagtgtt tcaggtgctg ccgcagttgc
361tgtgggacat caccttccgc ttctacgggc ccgacctgct gtgccgcctg gtcaagtact
421tgcaggtggt gggcatgttc gcctccacct acctgctgct gctcatgtcc ctggaccgct
481gcctggccat ctgccagccg ctgcgctcgc tgcgccgccg caccgaccgc ctggcagtgc
541tcgccacgtg gctcggctgc ctggtggcca gcgcgccgca ggtgcacatc ttctctctgc
601gcgaggtggc tgacggcgtc ttcgactgct gggccgtctt catccagccc tggggaccca
661aggcctacat cacatggatc acgctagctg tctacatcgt gccggtcatc gtgctcgctg
721cctgctacgg ccttatcagc ttcaagatct ggcagaattt gcggctcaag accgctgcag
781cggcggcggc cgaggcgcca gagggcgcgg cggctggcga tggggggcgc gtggccctgg
841cgcgtgtcag cagcgtcaag ctcatctcca aggccaagat ccgcacggtc aagatgactt
901tcatcatcgt gctggccTTC ATCGTGTGCT GGACGCCTTT CTTCTTCGTG CAGATGTGGA
961GCGTCTGGGA TGCCAACGCG CCCAAGGAAG CCTCGGCCTT CATCATCGTC ATGCTCCTGG
1021CCAGCCTCAA CAGCTGCTGC AACCCCTGGA TCTACATGCT GTTCACGGGC CACCTCTTCC
1081ACGAACTCGT GCAGCGCTTC CTGTGCTGCT CCGCCAGCTA CCTGAAGGGC AGACGCCTGG
1141GAGAGACGAG TGCCAGCAAA AAGAGCAACT CGTCCTCCTT TGTCCTGAGC CATCGCAGCT
1201CCAGCCAGAG GAGCTGCTCC CAGCCATCCA CGGCGTTGCC AACTTTCTTG TACAAAGTGG
1261TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1321CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1381ACATGCCAAA TCCGCAGCCT GCCACACGCG TTAAGTCgac aatcaacctc tggattacaa
1441aatttgtgaa agatt

Download FASTA (ORF) (Full)