Construct: ORF TRCN0000479734

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008666.1_s317c1
Derived from:
ccsbBroadEn_06593
DNA Barcode:
CCAGCTATCTAGTAGCCAATTCGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CD200 (4345)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479734
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4345 CD200 CD200 molecule NM_005944.7 99.8% 99.6% 32C>G
2 human 4345 CD200 CD200 molecule NM_001365852.1 97.2% 97% 0_1ins21;11C>G
3 human 4345 CD200 CD200 molecule NM_001365853.1 97.2% 97% 0_1ins21;11C>G
4 human 4345 CD200 CD200 molecule NM_001365854.1 97.2% 97% 0_1ins21;11C>G
5 human 4345 CD200 CD200 molecule NM_001365851.2 96.5% 95.6% (many diffs)
6 human 4345 CD200 CD200 molecule NM_001004196.3 91.3% 91.1% 12_86del;107C>G
7 human 4345 CD200 CD200 molecule NM_001318828.1 72.4% 72.4% 0_1ins222
8 human 4345 CD200 CD200 molecule NM_001318826.1 56.8% 45.5% 0_1ins343;77_78insGTACA
9 human 4345 CD200 CD200 molecule NM_001318830.1 56.8% 45.5% 0_1ins343;77_78insGTACA
10 human 4345 CD200 CD200 molecule NM_001365855.1 56.8% 45.5% 0_1ins343;77_78insGTACA
11 human 4345 CD200 CD200 molecule NR_158642.1 36.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
873
ORF length:
807
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gaggctggtg atcaggatgc ccttctgtca tctgtctacc tacagcctgg
121tttgggtcat ggcagcagtg gtgctgtgca cagcacaagt gcaagtggtg acccaggatg
181aaagagagca gctgtacaca cctgcttcct taaaatgctc tctgcaaaat gcccaggaag
241ccctcattgt gacatggcag aaaaagaaag ctgtaagccc agaaaacatg gtcaccttca
301gcgagaacca tggggtggtg atccagcctg cctataagga caagataaac attacccagc
361tgggactcca aaactcaacc atcaccttct ggaatatcac cctggaggat gaagggtgtt
421acatgtgtct cttcaatacc tttggttttg ggaagatcTC AGGAACGGCC TGCCTCACCG
481TCTATGTACA GCCCATAGTA TCCCTTCACT ACAAATTCTC TGAAGACCAC CTAAATATCA
541CTTGCTCTGC CACTGCCCGC CCAGCCCCCA TGGTCTTCTG GAAGGTCCCT CGGTCAGGGA
601TTGAAAATAG TACAGTGACT CTGTCTCACC CAAATGGGAC CACGTCTGTT ACCAGCATCC
661TCCATATCAA AGACCCTAAG AATCAGGTGG GGAAGGAGGT GATCTGCCAG GTGCTGCACC
721TGGGGACTGT GACCGACTTT AAGCAAACCG TCAACAAAGG CTATTGGTTT TCAGTTCCGC
781TATTGCTAAG CATTGTTTCC CTGGTAATTC TTCTCGTCCT AATCTCAATC TTACTGTACT
841GGAAACGTCA CCGGAATCAG GACCGAGAGC CCTACCCAAC TTTCTTGTAC AAAGTGGTTG
901ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
961GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGACC
1021AGCTATCTAG TAGCCAATTC GAACGCGTTA AGTCgacaat caacctctgg attacaaaat
1081ttgtgaaaga tt

Download FASTA (ORF) (Full)