Construct: ORF TRCN0000479842

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012042.1_s317c1
Derived from:
ccsbBroadEn_11506
DNA Barcode:
GTGGGGATGAATTGAGCGAAATAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRRC41 (10489)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479842
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10489 LRRC41 leucine rich repeat contain... NM_006369.4 69.4% 69.4% 1_744del
2 human 10489 LRRC41 leucine rich repeat contain... XR_002957992.1 52.7% 1_814del;2213_2446del;2741_3208del
3 human 10489 LRRC41 leucine rich repeat contain... XR_002957994.1 43.2% (many diffs)
4 mouse 230654 Lrrc41 leucine rich repeat contain... NM_153521.2 61.4% 65.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1758
ORF length:
1692
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag tgctggcttc tggcaaccag ggcctggtgg cccaccctgc cgcctctgtg
121gagaggcctc ccgaggccgg gccccatccc gagatgaagg gtccctctta ttgggctcac
181gtcggccccg ccgggatgct gctgagcgat gtgctgcagc cctgatggcc agccggcgta
241agagtgaagc caagcagatg cccagagctg cacctgccac tcgggtaaca cgccggagca
301cacaggagag cctgacagca ggcggaacag accttaagag ggagctgcac cccccagcca
361cctcccatga ggctcctggc accaagcggt caccttctgc tccagcagcc acctcctctg
421cctcttcttc tacatcctca tacaaacggg caccagctag ctcagcccca cagcctaagc
481ccctaaagcg tttcaagcga gctgcaggga agaagggtgc tcgcacccgt caggggcctg
541gtgcagagtc tgaagacctg tatgacttcg tttttattgt ggctggcgag aaggaggatg
601gcgaagagat ggagattggg gaagtggctt gtggagcttt ggatggatca gatcccagct
661gcctggggct tccagcactg gaagcttcac aaagattccg cagcatctcc accttggagc
721tattcacagt tccactctcc acagaggcag ccctgacact atgccacctg ctgagctcct
781gggtgtcact ggagagcctc acactctcct acaatggcct gggctctaac atcttccgcc
841tgctagacag cctgcgggcc ctgtcaggcc aggctggatg tcgcctccgt gccctgcatc
901tcagtgacct gttctcacca ctgcccatcc tggagctgac acgtgctatc gtgcgagcac
961tgcccctgct acgggtcctc tctattcgtg ttgaccaccc aagccagcgg gacaaccctg
1021gtgtgccagg gaatgcaggg ccccctagcc acataatagg cgatgaggag ataccagaaa
1081actgcctgga gcagttggag atgggatttc cacggggagc ccagccagcc ccactgctgt
1141gctccgttct gaaggcctcg ggttctctgc agcagctgtc cctggatagt gccacctttg
1201cctctcccca ggattttggg cttgttttgc aaacactcaa agagtacaac ctagccctga
1261aaagactgag cttccatgac atgaatctcg ctgactgtca gagcgaggtg ctctttttgc
1321tacagaatct gactctgcaa gagattacct tctccttctg ccgtctgttt gagaagcgcc
1381cagcccaatt tctgcctgag atggttgctg ctatgaaggg caactccaca ctgaagggcc
1441TCCGGCTGCC AGGGAACCGC CTGGGGAATG CTGGCCTGCT GGCCTTGGCA GATGTTTTCT
1501CAGAGGATTC ATCCTCCTCT CTCTGTCAGC TGGACATCAG TTCCAACTGC ATCAAGCCAG
1561ATGGGCTTCT GGAGTTCGCC AAGCGGCTGG AGCGCTGGGG CCGTGGAGCC TTTGGTCACC
1621TGCGCCTCTT CCAAAACTGG CTGGACCAGG ATGCAGTCAC AGCCAGGGAA GCCATCCGGC
1681GGCTCCGGGC TACCTGCCAT GTGGTTAGCG ACTCATGGGA CTCATCCCAG GCCTTCGCAG
1741ATTATGTTAG CACCATGTGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1801TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1861GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGTGGGGA TGAATTGAGC
1921GAAATACACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)

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