Construct: ORF TRCN0000479997

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018157.1_s317c1
Derived from:
ccsbBroadEn_00128
DNA Barcode:
ACATTTTCTGGAAAAGGTGGAACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATP5F1C (509)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479997
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 509 ATP5F1C ATP synthase F1 subunit gamma NM_001001973.3 100% 100%
2 human 509 ATP5F1C ATP synthase F1 subunit gamma NM_005174.3 99.6% 99.6% 891_892insGAT
3 human 509 ATP5F1C ATP synthase F1 subunit gamma NM_001320886.1 84.2% 84.2% 0_1ins141
4 human 509 ATP5F1C ATP synthase F1 subunit gamma XM_017016290.1 83.8% 83.8% 0_1ins141;750_751insGAT
5 mouse 11949 Atp5c1 ATP synthase, H+ transporti... NM_020615.4 87.4% 91.2% (many diffs)
6 mouse 11949 Atp5c1 ATP synthase, H+ transporti... XM_006497310.2 87.1% 90.9% (many diffs)
7 mouse 11949 Atp5c1 ATP synthase, H+ transporti... NM_001112738.1 80.7% 84.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
960
ORF length:
894
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61tcggcatgtt ctctcgcgcg ggtgtcgctg ggctgtcggc ctggaccttg cagccgcaat
121ggattcaagt tcgaaatatg gcaactttga aagatatcac caggagacta aagtccatca
181aaaacatcca gaaaattacc aagtctatga aaatggtagc ggcagcaaaa tatgcccgag
241ctgagagaga gctgaaacca gctcgaatat atggattggg atctttagct ctgtatgaaa
301aagctgatat caaggggcct gaagacaaga agaaacacct ccttattggt gtgtcctcag
361atcgaggact gtgtggtgct attcattcct ccattgctaa acagatgaaa agcgaggttg
421ctacactaac agcagctggg aaagaagtta tgcttgttgg aattggtgac aaaatcagag
481gcatacttta taggactcat tctgaccagt ttctggtggc attcaaagaa gtgggaagaa
541agccccccac ttttGGAGAT GCGTCAGTCA TTGCCCTTGA ATTACTAAAT TCTGGATATG
601AATTTGATGA AGGCTCCATC ATCTTTAATA AATTCAGGTC TGTCATCTCC TATAAGACAG
661AAGAAAAGCC CATCTTTTCC CTTAATACCG TTGCAAGTGC TGACAGCATG AGTATCTATG
721ACGATATTGA TGCTGACGTG CTGCAAAATT ACCAAGAATA CAATCTGGCC AACATCATCT
781ACTACTCTCT GAAGGAGTCC ACCACTAGTG AGCAGAGTGC CAGGATGACA GCCATGGACA
841ATGCCAGCAA GAATGCTTCT GAGATGATTG ACAAATTGAC ATTGACATTC AACCGTACCC
901GCCAAGCTGT CATCACAAAA GAGTTGATTG AAATTATCTC TGGTGCTGCA GCTCTGGATT
961ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1021GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1081TTTATATATC TTGTGGAAAG GACGAACATT TTCTGGAAAA GGTGGAACCA CGCGTTAAGT
1141Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)

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