Construct: ORF ccsbBroadEn_00128
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018157.1_s300c1, BRDN0000392354
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP5F1C (509)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 509 | ATP5F1C | ATP synthase F1 subunit gamma | NM_001001973.3 | 100% | 100% | |
| 2 | human | 509 | ATP5F1C | ATP synthase F1 subunit gamma | NM_005174.3 | 99.6% | 99.6% | 891_892insGAT |
| 3 | human | 509 | ATP5F1C | ATP synthase F1 subunit gamma | NM_001320886.1 | 84.2% | 84.2% | 0_1ins141 |
| 4 | human | 509 | ATP5F1C | ATP synthase F1 subunit gamma | XM_017016290.1 | 83.8% | 83.8% | 0_1ins141;750_751insGAT |
| 5 | mouse | 11949 | Atp5c1 | ATP synthase, H+ transporti... | NM_020615.4 | 87.4% | 91.2% | (many diffs) |
| 6 | mouse | 11949 | Atp5c1 | ATP synthase, H+ transporti... | XM_006497310.2 | 87.1% | 90.9% | (many diffs) |
| 7 | mouse | 11949 | Atp5c1 | ATP synthase, H+ transporti... | NM_001112738.1 | 80.7% | 84.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 68
- ORF end:
- 962
- ORF length:
- 894
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG GGGACAAAAA 61 AGTCGGCATG TTCTCTCGCG CGGGTGTCGC TGGGCTGTCG GCCTGGACCT TGCAGCCGCA 121 ATGGATTCAA GTTCGAAATA TGGCAACTTT GAAAGATATC ACCAGGAGAC TAAAGTCCAT 181 CAAAAACATC CAGAAAATTA CCAAGTCTAT GAAAATGGTA GCGGCAGCAA AATATGCCCG 241 AGCTGAGAGA GAGCTGAAAC CAGCTCGAAT ATATGGATTG GGATCTTTAG CTCTGTATGA 301 AAAAGCTGAT ATCAAGGGGC CTGAAGACAA GAAGAAACAC CTCCTTATTG GTGTGTCCTC 361 AGATCGAGGA CTGTGTGGTG CTATTCATTC CTCCATTGCT AAACAGATGA AAAGCGAGGT 421 TGCTACACTA ACAGCAGCTG GGAAAGAAGT TATGCTTGTT GGAATTGGTG ACAAAATCAG 481 AGGCATACTT TATAGGACTC ATTCTGACCA GTTTCTGGTG GCATTCAAAG AAGTGGGAAG 541 AAAGCCCCCC ACTTTTGGAG ATGCGTCAGT CATTGCCCTT GAATTACTAA ATTCTGGATA 601 TGAATTTGAT GAAGGCTCCA TCATCTTTAA TAAATTCAGG TCTGTCATCT CCTATAAGAC 661 AGAAGAAAAG CCCATCTTTT CCCTTAATAC CGTTGCAAGT GCTGACAGCA TGAGTATCTA 721 TGACGATATT GATGCTGACG TGCTGCAAAA TTACCAAGAA TACAATCTGG CCAACATCAT 781 CTACTACTCT CTGAAGGAGT CCACCACTAG TGAGCAGAGT GCCAGGATGA CAGCCATGGA 841 CAATGCCAGC AAGAATGCTT CTGAGATGAT TGACAAATTG ACATTGACAT TCAACCGTAC 901 CCGCCAAGCT GTCATCACAA AAGAGTTGAT TGAAATTATC TCTGGTGCTG CAGCTCTGGA 961 TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat caatttgttg 1021 caacgaac