Construct: ORF TRCN0000480072
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010345.1_s317c1
- Derived from:
- ccsbBroadEn_06537
- DNA Barcode:
- CCGGTACGCTGTATCCTCGCTTTT
- Epitope Tag:
- V5 (not translated due to frame shift)
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRMP (4033)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480072
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001204126.2 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 2 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001204127.2 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 3 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366540.1 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 4 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366541.1 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 5 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366542.1 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 6 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366543.1 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 7 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366544.1 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 8 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366545.1 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 9 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366546.1 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 10 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366547.1 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 11 | human | 4033 | LRMP | lymphoid restricted membran... | NM_006152.4 | 99.7% | 99.3% | 421C>G;590G>C;1496_1497delTGinsC |
| 12 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366548.1 | 89.1% | 79.5% | (many diffs) |
| 13 | human | 4033 | LRMP | lymphoid restricted membran... | NM_001366549.1 | 89.1% | 88.7% | (many diffs) |
| 14 | human | 4033 | LRMP | lymphoid restricted membran... | NR_159366.1 | 50.1% | (many diffs) | |
| 15 | human | 4033 | LRMP | lymphoid restricted membran... | NR_159369.1 | 49% | (many diffs) | |
| 16 | human | 4033 | LRMP | lymphoid restricted membran... | NR_159367.1 | 48.1% | (many diffs) | |
| 17 | human | 4033 | LRMP | lymphoid restricted membran... | NR_159368.1 | 47.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1566
- ORF length:
- 1497
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaatgatgac ccaagtatgg aagagaatgg tgttgaacgc gtgtgtcctg 121 agagcctgct gcagtccagg gaatattcct cactaccatt acccagacac acttcatcga 181 cagacggtac tataacttca agtgatcctg gattagaaat tctgaatatg gcttcttgtg 241 accttgacag aaactcgctc tgtaagaaag aggaggatac aagatcagct tctcccacga 301 tagaggccca aggcacaagt ccagctcatg ataatattgc attccaagac tctacgagta 361 aggataaaac catattaaat ctggaagcca aagaggaacc agaaacaata gaagaacata 421 aaaaagaaca tgcttcagga gactctgtgg tttcccctct tcctgtaacc actgtgaaat 481 cggttaacgt tagacaaagt gagaacactt ctgctaatga gaaggaggtg gaggcagaat 541 ttctcagatt atctttggga tttaagtgtg actggtttac cttggagaag agagtgaagc 601 ttgaagagag gtcccgtgac ttggcagaag aaaatttgaa gaaagaaatc actaactctt 661 taaaactatt agagtcttta acacctctgt gtgaagatga caaccaggca caggaaatca 721 ttaagaagct ggagaagagt ataaagtttc ttagccagtg tgcagcacga gtggccagta 781 gggctgagat gttgggagcc atcaatcagg aaagccgggt tagtaaagca gttgaagtga 841 tgattcagca cgtagaaaac ttgaagagga tgtatgccaa agagcacgct gaattagaag 901 aactgaaaca ggttcttctg cagaatgaaa ggtctttcaa tcctcttgaa gatgatgatg 961 actgccaaat taaaaaacgt tcagcttctc taaactccaa gccatcttct ctacgaagag 1021 tgactattgc ctctttaccc agaaatattg gaaatgcagg aatggtggct gggatggaaa 1081 ataatgatcg attcagtaga aggtcaagca gttggcgtat tttggggtca aagcagagtg 1141 aacaccgtcc ctcattacct cgatttatta gcacctattc ctgggCAGAT GCTGAAGAAG 1201 AAAAATGTGA ACTAAAAACT AAAGATGACT CAGAGCCATC TGGAGAAGAA ACAGTAGAAA 1261 GGACAAGGAA GCCAAGTCTT TCTGAAAAGA AAAATAATCC ATCAAAGTGG GATGTCTCTT 1321 CAGTTTATGA CACAATAGCT TCCTGGGCAA CAAATCTCAA GTCCTCCATC AGAAAGGCTA 1381 ATAAGGCCCT CTGGCTCTCT ATTGCATTCA TTGTACTGTT TGCAGCTTTG ATGAGCTTCC 1441 TCACAGGCCA ATTATTCCAG AAGTCTGTGG ATGCCGCTCC CACACAGCAA GAGGACTCAT 1501 GGACGTCTCT AGAACATATC TTGTGGCCAT TTACCAGACT CCGACACAAT GGGCCACCAC 1561 CAGCTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT 1621 CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC 1681 TTGGCTTTAT ATATCTTGTG GAAAGGACGA CCGGTACGCT GTATCCTCGC TTTTACGCGT 1741 TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt