Construct: ORF TRCN0000480094
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017223.1_s317c1
- Derived from:
- ccsbBroadEn_05078
- DNA Barcode:
- GACCCCAATGTCGAGCCTCATAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZC2HC1B (153918)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480094
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 153918 | ZC2HC1B | zinc finger C2HC-type conta... | NM_001013623.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 735
- ORF length:
- 666
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggctggggca gaaccatttt tggcagatgg caatcaggaa ttgtttccct 121 gtgaagtctg tggaagacgt tttgcagcag atgttctgga aaggcatgga ccaatatgta 181 agaaactctt caacagaaag cgtaaacctt tcagttcttt gaagcaaaga ttacagggca 241 ctgacattcc tactgtgaag aagactccac aatccaagtc tccacctgtg aggaagtcta 301 actggagaca acaacatgaa gactttatta atgcaatccg atcagcaaag cagtgtatgc 361 tagccattaa agaaggccga cccctcccac cTCCACCCCC TCCATCCTTG AACCCAGATT 421 ATATTCAACG TCCATATTGT ATGAGAAGGT TTAATGAAAG CGCAGCTGAG CGACATACTA 481 ATTTCTGCAA GGATCAGTCT TCTCGCCGAG TCTTTAATCC AGCTCAGACA GCAGCCAAAT 541 TGGCATCCAG AGCTCAGGGT AGGGCTCAGA TGGGTCCAAA AAAAGAACCA ACTGTTACCA 601 GTGCTGTGGG AGCTTTGCTG CAGAACAGGG TCCTGGTGGC CACGAATGAA GTCCCAACCA 661 AGTCAGGATT AGCTATGGAC CCTGCTTCTG GAGCAAAACT CAGACAAGGA TTTAGTAAAT 721 CTTCTAAAAA AGATTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 781 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 841 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GACCCCAATG TCGAGCCTCA 901 TAATACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt