Transcript: Human NM_001013623.3

Homo sapiens zinc finger C2HC-type containing 1B (ZC2HC1B), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
ZC2HC1B (153918)
Length:
951
CDS:
67..735

Additional Resources:

NCBI RefSeq record:
NM_001013623.3
NBCI Gene record:
ZC2HC1B (153918)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001013623.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000138356 CCGAGTCTTTAATCCAGCTCA pLKO.1 504 CDS 100% 2.640 2.112 N ZC2HC1B n/a
2 TRCN0000136166 GATGGCAATCAGGAATTGTTT pLKO.1 94 CDS 100% 5.625 3.938 N ZC2HC1B n/a
3 TRCN0000135725 CAACAGAAAGCGTAAACCTTT pLKO.1 189 CDS 100% 4.950 3.465 N ZC2HC1B n/a
4 TRCN0000138587 CACGAATGAAGTCCCAACCAA pLKO.1 639 CDS 100% 3.000 2.100 N ZC2HC1B n/a
5 TRCN0000138043 CCTACTGTGAAGAAGACTCCA pLKO.1 247 CDS 100% 2.640 1.848 N ZC2HC1B n/a
6 TRCN0000138885 GCAAAGATTACAGGGCACTGA pLKO.1 222 CDS 100% 2.640 1.848 N ZC2HC1B n/a
7 TRCN0000137665 GCAGATGTTCTGGAAAGGCAT pLKO.1 145 CDS 100% 2.640 1.848 N ZC2HC1B n/a
8 TRCN0000136283 GCGACATACTAATTTCTGCAA pLKO.1 468 CDS 100% 2.640 1.848 N ZC2HC1B n/a
9 TRCN0000137477 GCAATCAGGAATTGTTTCCCT pLKO.1 98 CDS 100% 0.750 0.525 N ZC2HC1B n/a
10 TRCN0000135987 GAAAGCGTAAACCTTTCAGTT pLKO.1 194 CDS 100% 0.495 0.347 N ZC2HC1B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001013623.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05078 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05078 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000480094 GACCCCAATGTCGAGCCTCATAAT pLX_317 51.3% 100% 100% V5 n/a
Download CSV