Construct: ORF TRCN0000480105
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003808.1_s317c1
- Derived from:
- ccsbBroadEn_01344
- DNA Barcode:
- TGCGAACTTACTCTATTTTTGGCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPRCAP (5790)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480105
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5790 | PTPRCAP | protein tyrosine phosphatas... | NM_005608.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 687
- ORF length:
- 618
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggctctgccc tgcaccttag ggctcgggat gctgctggcc ctgccagggg 121 ccttgggctc gggtggcagc gcggaggaca gcgtgggctc cagctctgtc accgttgtcc 181 tgctgctgct gctgctccta ctgctggcca ctggcctagc actggcctgg cgccgcctca 241 gccgtgactc agggggctac taccacccgg cccgcctagg tgccgcgctg tggggccgca 301 cgcggcgcct gctctgggCC AGCCCCCCAG GTCGCTGGCT GCAGGCCCGA GCTGAGCTGG 361 GGTCCACAGA CAATGACCTT GAGCGACAGG AGGATGAGCA GGACACAGAC TATGACCACG 421 TCGCGGATGG TGGCCTGCAG GCTGACCCTG GGGAAGGCGA GCAGCAATGT GGAGAGGCGT 481 CCAGCCCAGA GCAGGTCCCC GTGCGGGCTG AGGAAGCCAG AGACAGTGAC ACGGAGGGCG 541 ACCTGGTCCT CGGCTCCCCA GGACCAGCGA GCGCAGGGGG CAGTGCTGAG GCCCTGCTGA 601 GTGACCTGCA CGCCTTTGCT GGCAGCGCAG CCTGGGATGA CAGCGCCAGG GCAGCTGGGG 661 GCCAGGGCCT CCATGTCACC GCACTGTTGC CAACTTTCTT GTACAAAGTG GTTGATATCG 721 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 781 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATGCGAACT 841 TACTCTATTT TTGGCAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 901 aagatt