Construct: ORF TRCN0000480132
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006771.1_s317c1
- Derived from:
- ccsbBroadEn_14463
- DNA Barcode:
- CTACATCTGAGTATAGATATGCGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01270 (284751)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480132
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284751 | LINC01270 | long intergenic non-protein... | NR_034124.1 | 13.8% | 1_29del;345_2278del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 408
- ORF length:
- 315
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGACACA GCACTTTTGG GCACAAGGCA 121 GGGCCCAGAG GGGTGCGTGG GGGCCGCAGC CCAGCCCCCA AGCCCCGCCA GCGGCTTTAC 181 TGGGGTGTAA CAAACACACG ATAAACTGCG CATATTCCAG TGTTCATGTG GATGAGTTTG 241 GACATATGCA CACACTTCCG AAACCACCAG CACAATCAAG ACAGCAGACA TATCCATCGC 301 CCCCAAGGGT GTCCTTGTGT CTTTTTGTCA TTCATCCCTC CCGGCCGCCC CATCCACACT 361 CCCATCGCCT GCCGACTGTG GCTGATCTGC TTTCTGCGGC TGTGGATTTG CCAACTTTCT 421 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 481 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 541 GTGGAAAGGA CGACTACATC TGAGTATAGA TATGCGGACG CGTTAAGTCg acaatcaacc 601 tctggattac aaaatttgtg aaagatt