Construct: ORF TRCN0000480134

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006248.1_s317c1
Derived from:
ccsbBroadEn_03403
DNA Barcode:
CCCCACCACCGTACAAACCTCGAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MIS18A (54069)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480134
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54069 MIS18A MIS18 kinetochore protein A NM_018944.3 100% 100%
2 human 54069 MIS18A MIS18 kinetochore protein A XM_017028401.1 84.6% 75.9% (many diffs)
3 human 54069 MIS18A MIS18 kinetochore protein A XM_017028400.1 82.9% 73.7% (many diffs)
4 human 54069 MIS18A MIS18 kinetochore protein A XR_002958619.1 13.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
765
ORF length:
699
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc aggcgttcgg tcactgaggt gtagcagagg atgcgctggc ggctgtgagt
121gcggcgacaa gggcaaatgc agcgactcct cgctgttggg caagagactc tccgaagact
181cgagccgcca ccagctgttg cagaagtggg cgagcatgtg gagctccatg agcgaagacg
241cgtcggtggc cgacatggag agggcgcagc tggaggagga ggcggcggct gcggaggaga
301ggccgctggt gttcctgtgc tccggctgcc ggcggccgct gggcgactcg ctgagctggg
361tggccagcca ggaggacacc aactgcatcc TGCTTCGCTG TGTTTCCTGT AATGTTTCTG
421TGGATAAGGA ACAGAAGCTA TCCAAACGTG AAAAGGAAAA TGGTTGCGTC CTTGAGACTT
481TGTGCTGCGC GGGGTGCTCA CTCAATCTTG GCTACGTGTA CAGATGCACG CCCAAGAATC
541TTGATTACAA GAGAGACTTG TTTTGCCTCA GTGTTGAAGC CATTGAAAGT TATGTTTTAG
601GGTCCTCTGA AAAGCAAATT GTGTCAGAAG ATAAAGAGCT TTTTAATCTT GAAAGCAGAG
661TTGAAATAGA AAAGTCTCTA ACACAGATGG AAGATGTCTT GAAAGCATTA CAAATGAAGC
721TGTGGGAGGC CGAATCCAAA TTGTCCTTTG CCACTTGTAA AAGCTGCCCA ACTTTCTTGT
781ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
841AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
901GAAAGGACGA CCCCACCACC GTACAAACCT CGAGACGCGT TAAGTCgaca atcaacctct
961ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)