Construct: ORF TRCN0000480142
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018174.1_s317c1
- Derived from:
- ccsbBroadEn_13687
- DNA Barcode:
- GGCGGGAGTAGTTCCTACGTATCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC88C (440193)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480142
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440193 | CCDC88C | coiled-coil domain containi... | XM_017021336.1 | 47.7% | 47.5% | (many diffs) |
| 2 | human | 440193 | CCDC88C | coiled-coil domain containi... | XM_011536796.2 | 25.2% | 25.2% | (many diffs) |
| 3 | human | 440193 | CCDC88C | coiled-coil domain containi... | NM_001080414.4 | 24.8% | 24.7% | (many diffs) |
| 4 | human | 440193 | CCDC88C | coiled-coil domain containi... | XR_429316.4 | 13% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1584
- ORF length:
- 1518
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc cgtactaagc cctggggatc taaaaccaaa gcgaggctcc ccacacagag 121 gcagccttga ccgcacagat gcctccaccg atctggccat gaggtcctgg ccctcggagc 181 tgggctcccg gacttgctca acttcagcca ccactacagc cccttccaac tccaccccca 241 tcgcccggca cccaggccgc accaaaggct ataactcaga tgacaacctc tgtgagccat 301 ccctggagtt tgaggtcccc aaccacaggc agtacgtgtc gcggccaagt agcttagaga 361 gcagtagaaa cacatccagc aacagctcac ctcttaacct aaaaggctcc tccgagcagc 421 tccatggccg gtctgagagc ttcagcagcg aagacctgat ccccagcagg gacctggcca 481 ctttgccccg ggaagccagc acaccgggac gcaacgccct cggccgccac gagtacccct 541 tgcctcggaa cgggcctctc ccacaggagg gtgcccagaa gaggggcaca gcccctccct 601 acgtcggagt gcggccctgc tcggcctccc ccagcagtga gatggtcacc ttggaggagt 661 tcctggagga gagcaaccgc agctccccca cccatgacac tcccagttgc cgggatgacc 721 tgctgagtga ctacttccga aaggccagcg atcccccagc catcggaggc caaccaggac 781 cacctgccaa gaaagaaggg gccaagatgc ccaccaactt tgtggccccc accgtcaaaa 841 tggccgcccc cacctcggag gggaggccgc tgaagcccgg gcagtacgta aagccaaact 901 tcagactgac tgaggccgag gccccaccca gcgtggcccc gagacaggcc cagcctcccc 961 agagcctgtc tctgggcaga ccccggcagg ctcctgaggc cttagggggc agagagacag 1021 gcagccacac cctgcaaagc cccgcacccc ccagctccca tagcctggcc cgggagcgga 1081 ccccacttgt gggaaaggct ggcagctcct gtcagggccc aggtccccgc agccggccgc 1141 tggacacgag gcgcttctcc ctggcTCCCC CAAAGGAGGA GAGGCTGGCC CCCCTGCATC 1201 AGTCTGCCAC AGCCCCCGCC ATTGCCACTG CAGGTGCTGG TGCTGCTGCT GCTGGCAGTG 1261 GCAGCAACTC CCAGCTCCTG CACTTCTCAC CTGCTGCAGC CCCGGCTGCC AGGACCAAGC 1321 CCAAGGCGCC CCCACGCTCA GGGGAGGTGG CCACCATCAC CCCTGTCCGG GCAGGGCTCA 1381 GCCTCTCAGA GGGAGACGGG GTCCCGGGGC AGGGCTGCAG TGAGGGGCTT CCGGCCAAGA 1441 GCCCAGGTCG GTCTCCCGAT TTGGCTCCCC ACCCCGGCCG GGCCCTGGAG GACTGCAGTC 1501 GAGGGAGCGT CTCAAAGAGC AGTCCGGCCT CCCCGGAGCC CGGCGGGGAT CCGCAGACCG 1561 TGTGGTATGA GTACGGCTGT GTGTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1621 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1681 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG GCGGGAGTAG 1741 TTCCTACGTA TCCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 1801 att