Construct: ORF TRCN0000480253

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002758.1_s317c1
Derived from:
ccsbBroadEn_11556
DNA Barcode:
CCAGTGCGGGGAATGCCATATAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ALDH1L1 (10840)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480253
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... XM_017005614.2 60.6% 59.5% (many diffs)
2 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... XM_017005613.2 59.9% 58.8% (many diffs)
3 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... NM_012190.4 55.9% 54.6% 1470_1620del;1667_2706del
4 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... XM_006713481.3 55.9% 54.6% 1470_1620del;1667_2706del
5 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... XM_011512355.1 55.9% 54.6% 1470_1620del;1667_2706del
6 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... XM_024453325.1 55.9% 54.6% 1470_1620del;1667_2706del
7 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... NM_001270364.1 55.3% 54% 1_30del;1500_1650del;1697_2736del
8 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... NR_072979.2 53.8% 1_134del;1650_2813del
9 human 10840 ALDH1L1 aldehyde dehydrogenase 1 fa... NM_001270365.2 44.7% 43.4% 350_351ins303;1167_1317del;1364_2403del
10 mouse 107747 Aldh1l1 aldehyde dehydrogenase 1 fa... NM_027406.1 47.8% 49.2% (many diffs)
11 mouse 107747 Aldh1l1 aldehyde dehydrogenase 1 fa... XM_006505279.3 47.8% 49.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1581
ORF length:
1515
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gattgcagtg attggacaga gcctgtttgg ccaggaagtt tactgccacc
121tgaggaagga gggccacgaa gtggtgggtg tgttcactgt tccagacaag gatggaaagg
181ccgaccccct gggtctggaa gctgagaagg atggagtgcc ggtattcaag tactcccggt
241ggcgtgcaaa aggacaggct ttgcctgatg tggtggcaaa ataccaggct ttgggggccg
301agctcaacgt cctgcccttc tgcagccaat tcatccccat ggagataatc agtgcccccc
361ggcatggctc catcatctat cacccgtcac tgctccctag gcaccgaggg gcctcggcca
421tcaactggac cctcattcac ggagataaga aaggggggtt ttccatcttc tgggcggatg
481atggtctgga caccggagac ctgctgctgc agaaggagtg tgaggtgctc ccggacgaca
541ccgtgagcac gctgtacaac cgcttcctct tccctgaagg catcaaaggg atggtgcagg
601ccgtgaggct gatcgctgag ggcaaagccc ccagactccc tcagcctgag gaaggagcca
661cctatgaggg gattcagaag aaggagacag ccaagatcaa ctgggaccag ccggcagagg
721ccattcacaa ctggatccgc gggaacgaca aggtgccggg agcctggaca gaggcctgtg
781aacagaaact gacatttttc aactcaacgc tgaacacttc aggcctggtg cccgagggag
841acgctttgcc catcccagga gcccatcggc caggggtggt caccaaagca ggactcatcc
901tctttgggaa tgatgacaaa atgctgctgg tgaagaatat tcagctggag gatggcaaaa
961tgatcctggc ctcgaacttc tttaaggggg cagccagcag tgtccttgag ctgacagagg
1021cagagctggt tactgcggag gctgtgcgga gtgtttggca gcggatcctc cccaaagtcc
1081tggaggttga agactccact gatttcttca agtcaggggc cgcgtctgtg gacgttgtga
1141ggctggtgga ggaagtgaag gagctgtgtg atggcctgga gttagaaaat gaagatgtgt
1201acatggcatc cacctttggg gacttcatCC AGCTGTTAGT GAGGAAGCTG CGAGGGGACG
1261ATGAGGAGGG CGAGTGCAGC ATTGACTACG TGGAAATGGC AGTGAACAAG CGCACTGTCC
1321GCATGCCCCA CCAGCTCTTC ATTGGGGGGG AGTTCGTGGA TGCCGAGGGC GCCAAGACCT
1381CTGAGACCAT CAATCCCACC GATGGAAGTG TCATCTGCCA GGTATCCCTG GCCCAAGTCA
1441CCGACGTCGA CAAGGCAGTG GCCGCAGCCA AGGATGCCTT TGAGAATGGA CGGTGGGGGA
1501AGATCAGTGC GCGGGACCGG GGCCGGCTGA TGTACAGGGC TCCACCATCC CCATCAACCA
1561GGCCAGACCC AACCGCAACC TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1621CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1681AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACCAG TGCGGGGAAT
1741GCCATATAAT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

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