Construct: ORF TRCN0000480265
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014172.1_s317c1
- Derived from:
- ccsbBroadEn_13195
- DNA Barcode:
- TGTTAGGAAAGAACTCTAAATTTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PXDNL (137902)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480265
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 137902 | PXDNL | peroxidasin like | XM_005251168.3 | 60.6% | 58.6% | (many diffs) |
| 2 | human | 137902 | PXDNL | peroxidasin like | XM_011517458.2 | 38.7% | 37.5% | (many diffs) |
| 3 | human | 137902 | PXDNL | peroxidasin like | XM_017013041.1 | 38.7% | 37.5% | (many diffs) |
| 4 | human | 137902 | PXDNL | peroxidasin like | NM_144651.5 | 35.1% | 34.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1614
- ORF length:
- 1545
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gctcatgcac tggggctggt ttctagagca cgacttggac cacacagtgc 121 ctgcgctgag cacagcccgc ttctcggatg ggcggccgtg cagctccgtc tgcaccaacg 181 accctccttg tttccccatg aacacccggc acgccgaccc ccggggcacc cacgcgccct 241 gcatgctctt cgcgcgctcc agccccgcgt gtgccagcgg ccgtccctct gcgacggtgg 301 attcagtcta tgcacgagag cagatcaacc agcaaacagc ctacatcgat ggctccaacg 361 tttacgggag ctcggagcgg gaatcccagg ctctcagaga cccttcggtg cctcggggtc 421 tcctgaagac aggctttcct tggcctccct ccggaaagcc cttattgccc ttttctacag 481 gcccacccac cgagtgcgcg cgacaggagc aggagagccc ctgtttcctg gccggggacc 541 accgggccaa cgagcatctg gctctggccg ccatgcacac cctgtggttc cgggaacaca 601 acagggtggc cacggagctg tccgccctga acccccactg ggagggaaac acggtttacc 661 aggaagccag gaagatcgtg ggcgcggagc tgcagcacat cacctacagc cactggctgc 721 ctaaggtcct gggggaccct ggcactagga tgctgagggg ttaccgaggc tacaacccca 781 acgtgaatgc aggcatcatt aactcttttg ctactgcagc ctttagattt ggccacacat 841 taatcaatcc tattctttac cgactgaatg ccaccttagg tgaaatttcc gaaggccacc 901 ttccgttcca taaagcgctc ttttcaccgt ccagaataat caaggaaggt gggatagacc 961 cggttctccg ggggctgttt ggcgtggctg ctaaatggcg ggcaccctcc taccttctca 1021 gtcctgagct gacccagagg ctcttctccg cggcttattc tgcggccgtg gattcggctg 1081 ccaccatcat tcaaaggggt agagaccacg ggatcccacc atatgttgac ttcagagttt 1141 tctgtaattt gacttcagtt aagaactttg aggatcTTCA AAATGAAATT AAAGATTCAG 1201 AGATTAGACA AAAACTGAGA AAGTTGTACG GCTCTCCAGG TGACATTGAC CTCTGGCCCG 1261 CCCTTATGGT TGAAGACCTG ATTCCTGGTA CAAGAGTGGG ACCAACACTT ATGTGCCTGT 1321 TTGTTACCCA GTTTCAGCGG CTAAGAGATG GAGATAGGTT CTGGTATGAA AACCCTGGAG 1381 TATTTACCCC GGCACAACTC ACTCAGCTGA AGCAGGCGTC CCTGAGCCGG GTGCTTTGTG 1441 ACAATGGTGA CAGCATTCAG CAAGTGCAGG CTGATGTCTT TGTAAAGGCA GAATACCCAC 1501 AGGATTACCT GAACTGCAGC GAGATCCCGA AGGTGGACCT GCGAGTGTGG CAAGACTGCT 1561 GTGCAGATAA ACAAGCTGGA GGCACGCCTG AGGCAGGCAG GGTGTACAGA TGTTTGCCAA 1621 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 1681 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 1741 TATCTTGTGG AAAGGACGAT GTTAGGAAAG AACTCTAAAT TTGACGCGTT AAGTCgacaa 1801 tcaacctctg gattacaaaa tttgtgaaag att