Construct: ORF TRCN0000480267

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013813.1_s317c1
Derived from:
ccsbBroadEn_07295
DNA Barcode:
ACTTAAAATATATCTTCATAGTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNFRSF14 (8764)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480267
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8764 TNFRSF14 TNF receptor superfamily me... NM_003820.3 99.8% 99.6% 50A>G
2 human 8764 TNFRSF14 TNF receptor superfamily me... XM_006711019.3 69.4% 63.8% 50A>G;551_552ins104;591_592ins154
3 human 8764 TNFRSF14 TNF receptor superfamily me... XM_017002720.1 68.6% 66% (many diffs)
4 human 8764 TNFRSF14 TNF receptor superfamily me... NM_001297605.1 64.8% 64.6% 50A>G;552_553ins297
5 human 8764 TNFRSF14 TNF receptor superfamily me... XM_011542383.2 58.3% 39% (many diffs)
6 human 8764 TNFRSF14 TNF receptor superfamily me... XR_001737513.2 45% (many diffs)
7 human 8764 TNFRSF14 TNF receptor superfamily me... XR_001737512.2 43.9% (many diffs)
8 human 8764 TNFRSF14 TNF receptor superfamily me... XR_001737511.1 40.3% (many diffs)
9 human 8764 TNFRSF14 TNF receptor superfamily me... XR_426638.3 30% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
915
ORF length:
849
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gcctcctgga gactgggggc ctcctccctg gagatccacc cccagaaccg
121acgtcttgag gctggtgctg tatctcacct tcctgggagc cccctgctac gccccagctc
181tgccgtcctg caaggaggac gagtacccag tgggctccga gtgctgcccc aagtgcagtc
241caggttatcg tgtgaaggag gcctgcgggg agctgacggg cacagtgtgt gaaccctgcc
301ctccaggcac ctacattgcc cacctcaatg gcctaagcaa gtgtctgcag tgccaaatgt
361gtgacccagc catgggcctg cgcgcgagcc ggaactgctc caggacagag aacgccgtgt
421gtggctgcag cccaggccac ttctgcatcg tccaggacgg ggaccactgc gccgcgtgcc
481gcgcttacgc caccTCCAGC CCGGGCCAGA GGGTGCAGAA GGGAGGCACC GAGAGTCAGG
541ACACCCTGTG TCAGAACTGC CCCCCGGGGA CCTTCTCTCC CAATGGGACC CTGGAGGAAT
601GTCAGCACCA GACCAAGTGC AGCTGGCTGG TGACGAAGGC CGGAGCTGGG ACCAGCAGCT
661CCCACTGGGT ATGGTGGTTT CTCTCAGGGA GCCTCGTCAT CGTCATTGTT TGCTCCACAG
721TTGGCCTAAT CATATGTGTG AAAAGAAGAA AGCCAAGGGG TGATGTAGTC AAGGTGATCG
781TCTCCGTCCA GCGGAAAAGA CAGGAGGCAG AAGGTGAGGC CACAGTCATT GAGGCCCTGC
841AGGCCCCTCC GGACGTCACC ACGGTGGCCG TGGAGGAGAC AATACCCTCA TTCACGGGGA
901GGAGCCCAAA CCACTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
961CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1021TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA ACTTAAAATA TATCTTCATA
1081GTGCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)