Construct: ORF TRCN0000480269
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008877.2_s317c1
- Derived from:
- ccsbBroadEn_11210
- DNA Barcode:
- TAAGCGGTCAACCACGCGGAAGTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZRSR2P1 (7310)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480269
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | NM_005089.3 | 93.8% | 90.9% | (many diffs) |
| 2 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_017029881.2 | 90.9% | 88% | (many diffs) |
| 3 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_011545589.3 | 83.2% | 79.8% | (many diffs) |
| 4 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_005274597.3 | 64.3% | 62.1% | (many diffs) |
| 5 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_017029882.2 | 64.3% | 62.1% | (many diffs) |
| 6 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_017029883.2 | 64.3% | 62.1% | (many diffs) |
| 7 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_024452455.1 | 64.3% | 62.1% | (many diffs) |
| 8 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_024452456.1 | 64.3% | 62.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1506
- ORF length:
- 1437
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggctgcactt gagaagatga cgtttcccaa gaagatgaca tttccagaga 121 aaccaagcca caaaaagtac agggccgccc tgaagaagga gaaacgaaag aaacgtcggc 181 aggaacttgc tcgactgaga gactcaggac tctcacagga ggaggaagag gacactttta 241 ttgaagaaca acaactagaa gaagagaagc tattggaaag agagagggaa agattacatg 301 aggagtggtt gctgagggag cagaaggcac aagaagaatt cagaataaag aaggaaaagg 361 aagaggcggc taaaaaatgg ctagaagaac aagagagaaa gttaaaggaa caatggaaag 421 aacagcagag gaaagagaga gaagaggagg agcagaaaca acaggagaag aaagaaaaag 481 aggaagctgt gcagaagatg ctggatcagg ctgaaaatga tttagaaaat agtaccacat 541 ggcaaaaccc agaaccaccc gtggatttca gagtaatgga gaaggatcga gctaattgtc 601 ccttctacag taaaacagga gcttgcagat ttggagacag atgttcacgt aaacataatt 661 tcccaacatc tagtcctacc cttcttatta agagcatgtt tacaacgttt ggaatggagc 721 agtgcaggag ggatgactat gaccctgacg caagcctgga gtacagcgag gaagaaacct 781 accaacagtt cctagatttc tatgaggatg tgttgcccga gttcaagaac gtggggaaag 841 tgattcagtt caaggtcagc tgcaatttgg aacctcacct gaggggcaat gtatatgttc 901 agtaccagtc ggaagaagaa tgccaagcag ccctttctct gtttaacgga cgatggtatg 961 caggacgaca gctgcaatgt gaattctgcc cagtgacccg gtggaaaatg gcgatttgtg 1021 gtttatttga aatacaacaa tgtccaagag gaaaacactg caactttctt catgtgttca 1081 gaaatcccaa caatgaattc tgggaagcta atagagacat ctacttgtct tcagatcaga 1141 ctggctcctc ctttggcaag aacTCCGAGA GGAGGGAGAA GATGGGCCAC CACGACCACT 1201 ACTACAGCAG GCAGCGGGGA AGGAGAAACC CTAGTCCAGA CCACACCTAC AAAAGAAATG 1261 GGGAATCCGA GAGAAAAAAG AGTAGTCATA GGGGGAAGAA ATCTCACAAA CGCACATCAA 1321 AGAGTCGGGA GAGGCACAAT TCACCAAGCA GAGGAAGAAA TAGGCACCGC AGCTGGGACC 1381 AGGGCCGCCG GAGCCAGAGC CGCAGGAGCC ACCGCAGCCG GAGCCAAAGT TCCTCTAGGT 1441 GCCGAAGTCG TGGGAGGAGG AAGTCGGGTA ATAGAGACAG AACTGTTCAG AGTCCCCAAT 1501 CCAAATTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 1561 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 1621 CTTGGCTTTA TATATCTTGT GGAAAGGACG ATAAGCGGTC AACCACGCGG AAGTTACGCG 1681 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt