Construct: ORF TRCN0000480276

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004272.2_s317c1
Derived from:
ccsbBroadEn_12323
DNA Barcode:
GAAAAGGCACGCGACGAGTTTGTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COQ8A (56997)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480276
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56997 COQ8A coenzyme Q8A NM_020247.5 63.3% 63.3% 1231_1941del
2 human 56997 COQ8A coenzyme Q8A XM_005273201.1 63.3% 63.3% 1231_1941del
3 human 56997 COQ8A coenzyme Q8A XM_011544238.1 63.3% 63.3% 1231_1941del
4 human 56997 COQ8A coenzyme Q8A XM_011544239.2 63.3% 63.3% 1231_1941del
5 human 56997 COQ8A coenzyme Q8A XM_011544241.2 63.3% 63.3% 1231_1941del
6 human 56997 COQ8A coenzyme Q8A XM_017001852.1 63.3% 63.3% 1231_1941del
7 human 56997 COQ8A coenzyme Q8A XM_024448517.1 63.3% 63.3% 1231_1941del
8 human 56997 COQ8A coenzyme Q8A XM_024448518.1 63.3% 63.3% 1231_1941del
9 mouse 67426 Coq8a coenzyme Q8A XM_011238855.2 35.9% 38.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1299
ORF length:
1230
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggctgccata ttgggagaca ccatcatggt ggctaaaggc cttgtcaagc
121tgacccaggc ggccgtggaa acccacctgc agcacttggg catcggaggg gagctgatca
181tggcggccag ggccctgcag tccacggctg tggagcagat tggcatgttc ttggggaagg
241tgcagggtca ggataaacat gaagaatatt ttgctgagaa cttcggcggc ccagaagggg
301agttccactt ctcagtcccg catgcagccg gagcctccac agacttctct tcagcctccg
361ctcccgacca gtcagcgccc ccatccctgg gtcatgccca cagcgagggc ccagctcctg
421cctacgtggc cagtggaccc tttagagaag ccgggttccc cggccaggcc tcctcccctc
481tgggcagggc caacgggagg ctctttgcaa accccagaga ctcattctct gccatgggct
541ttcagcgaag gttcttccac caggaccaat cccctgttgg gggcctcaca gccgaggaca
601ttgagaaggc ccggcaggct aaggctcgcc ccgagaacaa gcagcacaaa cagacgctca
661gcgagcatgc ccgggagcgg aaggtgcctg tgacgaggat tggccggctg gccaacttcg
721gaggtctggc cgtgggcctg ggcttcgggg cactggcaga ggtcgccaag aagagcctgc
781gctccgagga cccctcaggg aagaaggccg tgctgggttc cagtcctttc ctgtccgagg
841ccaatgcaga gcggatcgtg cgcacgcTCT GCAAGGTGCG TGGTGCGGCA CTCAAGCTGG
901GCCAGATGCT GAGCATCCAG GATGATGCCT TTATCAACCC CCACCTGGCT AAGATCTTCG
961AGCGGGTGCG GCAGAGCGCG GACTTCATGC CACTGAAGCA GATGATGAAA ACTCTCAACA
1021ACGACCTGGG CCCCAACTGG CGGGACAAGT TGGAATACTT CGAGGAGCGG CCCTTCGCCG
1081CCGCATCCAT TGGGCAGGTG CACTTGGCCC GAATGAAGGG CGGCCGCGAG GTGGCCATGA
1141AGATCCAGTA CCCTGGCGTG GCCCAGAGCA TCAACAGTGA TGTCAACAAC CTCATGGCCG
1201TGTTGAACAT GAGCAACATG CTTCCAGAAG GCCTGTTCCC CGAGCACCTG ATCGACGTGC
1261TGAGGCGGGA GCTGGCCCTG GAGTGTGACT ACCAGCGATT GCCAACTTTC TTGTACAAAG
1321TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1381GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1441ACGAGAAAAG GCACGCGACG AGTTTGTTAC GCGTTAAGTC gacaatcaac ctctggatta
1501caaaatttgt gaaagatt

Download FASTA (ORF) (Full)