Construct: ORF TRCN0000480407

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009841.2_s317c1
Derived from:
ccsbBroadEn_05391
DNA Barcode:
TCAACCCCATAATAGGGTCCACGA
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC9A9 (285195)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480407
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285195 SLC9A9 solute carrier family 9 mem... NM_173653.4 100% 100%
2 human 285195 SLC9A9 solute carrier family 9 mem... XM_017006202.2 84.7% 83.7% (many diffs)
3 human 285195 SLC9A9 solute carrier family 9 mem... XM_017006203.1 81.3% 80.2% (many diffs)
4 human 285195 SLC9A9 solute carrier family 9 mem... XM_011512703.3 66.4% 66.3% 1_1delAins649
5 human 285195 SLC9A9 solute carrier family 9 mem... XM_011512704.3 54.6% 51.9% (many diffs)
6 mouse 331004 Slc9a9 solute carrier family 9 (so... NM_177909.5 86.2% 92.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2001
ORF length:
1935
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gagacagtca agggttatgt cagaaaagga tgagtatcag tttcaacatc
121agggagcggt ggagctgctt gtcttcaatt ttttgctcat ccttaccatt ttgacaatct
181ggttatttaa aaatcatcga ttccgcttct tgcatgaaac tggaggagca atggtgtatg
241gccttataat gggactaatt ttacgatatg ctacagcacc aactgatatt gaaagtggaa
301ctgtctatga ctgtgtaaaa ctaactttca gtccatcaac tctgctggtt aatatcactg
361accaagttta tgaatataaa tacaaaagag aaataagtca gcacaacatc aatcctcatc
421aaggaaatgc tatacttgaa aagatgacat ttgatccaga aatcttcttc aatgttttac
481tgccaccaat tatatttcat gcaggatata gtctaaagaa gagacacttt tttcaaaact
541taggatctat tttaacgtat gccttcttgg gaactgccat ctcctgcatc gtcatagggt
601taattatgta tggttttgtg aaggctatga tacatgctgg ccagctgaaa aatggagact
661ttcatttcac tgactgttta ttttttggtt cactgatgtc tgctacagat ccagtgacag
721tgctggccat tttccatgaa ctgcacgtcg accctgacct gtacacactc ttgtttggag
781agagtgtgtt gaatgatgca gtggccatag tccttacata ttctatatcc atttacagtc
841ccaaggagaa tccaaatgca tttgatgccg cagcattctt ccagtctgtg gggaatttcc
901tgggaatctt cgctggctca tttgcaatgg ggtctgcgta tgccatcatc acagcactgt
961tgaccaaatt taccaagctg tgtgagttcc cgatgctgga aaccggcctg tttttcctgc
1021tttcttggag tgccttcctg tctgccgagg ctgccggcct aacagggata gttgctgttc
1081tcttctgtgg agtcacacaa gcacattata cctacaacaa tctgtcttcg gattccaaaa
1141taagaactaa acagttgttt gaatttatga actttttggc ggagaacgtc atcttctgtt
1201acatgggcct ggcactgttc acgttccaga atcatatctt taatgctctt tttatacttg
1261gagcctttct agcaattttt gttgccagag cctgcaacat atatcccctc tccttcctcc
1321tgaatctagg ccgaaaacag aagatcccct ggaactttca gcacatgatg atgttttcag
1381gtttgcgagg agcgatcgca tttgccttag ctattcggaa cacagaatct cagcccaaac
1441aaatgatgtt taccactacg ctgctcctcg tgttcttcac tgtctgggta tttggaggag
1501gaacaacccc catgttgact tggcttcaga tcagagttgg cgtggacctg gatgaaaatc
1561tgaaggagga cccctcctca caacaccagg aagcaaataa cttggataaa aacatgacga
1621aagcagagag tgctcggctc ttcagaatgt ggtatagctt tgaCCACAAG TATCTGAAAC
1681CAATTTTAAC CCACTCTGGT CCTCCGCTGA CTACAACATT ACCTGAATGG TGTGGTCCGA
1741TTTCCAGGCT GCTTACCAGT CCTCAAGCCT ATGGGGAACA GCTAAAAGAG GATGATGTGG
1801AATGCATTGT AAACCAGGAT GAACTAGCCA TAAATTACCA GGAGCAAGCC TCCTCACCCT
1861GCAGTCCTCC TGCAAGGCTA GGTCTGGACC AGAAAGCTTC ACCCCAGACG CCAGGCAAGG
1921AAAACATTTA TGAGGGAGAC CTCGGCCTGG GAGGCTATGA ACTCAAGCTT GAGCAAACTT
1981TGGGTCAATC CCAGTTGAAT TACCCAATTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC
2041TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA
2101AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATCAAC CCCATAATAG
2161GGTCCACGAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)