Construct: ORF TRCN0000480556

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012090.1_s317c1
Derived from:
ccsbBroadEn_12241
DNA Barcode:
CCGTAGATGGCAAGCAAACCACAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BCAS4 (55653)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480556
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55653 BCAS4 breast carcinoma amplified ... NM_198799.3 85.2% 85.2% 1_90del
2 human 55653 BCAS4 breast carcinoma amplified ... XM_011528887.2 85% 85.2% 1_90del;609A>G
3 human 55653 BCAS4 breast carcinoma amplified ... XM_011528886.2 69.1% 55.6% (many diffs)
4 human 55653 BCAS4 breast carcinoma amplified ... NM_017843.4 63.1% 66% 1_90del;490_586del;633_634ins73
5 human 55653 BCAS4 breast carcinoma amplified ... NM_001010974.2 63% 63% 1_90del;354_355ins135
6 human 55653 BCAS4 breast carcinoma amplified ... XM_017027932.1 50.6% 47.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
588
ORF length:
519
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gctgctcgtg gacgctgatc agccggagcc catgcgcagc ggggcgcgcg
121agctcgcgct cttcctgacc cccgagcctg gggccgaggc gaaggaggtg gaggagacca
181tcgagggcat gctcctcagg ctggaagagt tttgcagcct ggctgacctg atcaggagtg
241atacttcaca gatcctggag gaaaacatcc cagtccTTAA GGCCAAACTG ACAGAAATGC
301GTGGCATCTA TGCCAAAGTG GACCGGCTAG AGGCCTTCGT CAAGATGGTT GGACACCACG
361TCGCCTTCCT GGAAGCAGAC GTGCTTCAGG CTGAGCGGGA CCATGGGGCC TTCCCTCAGG
421CCCTGCGGAG GTGGCTGGGA TCCGCAGGGC TCCCCTCCTT CAGGAACAAG TCACCTGCAC
481CGGTGCCCGT GACGTACGAG CTGCCCACAC TGTATAGGAC GGAGGACTAT TTTCCTGTGG
541ACGCCGGGGA AGCACAGCAC CACCCCCGCA CCTGCCCTCG GCCTTTGTTG CCAACTTTCT
601TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
661CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
721GTGGAAAGGA CGACCGTAGA TGGCAAGCAA ACCACACACG CGTTAAGTCg acaatcaacc
781tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)