Construct: ORF TRCN0000480601

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007805.1_s317c1
Derived from:
ccsbBroadEn_08766
DNA Barcode:
CTCTGTTGAGCCCCAGAGCAGGAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBAK (57786)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480601
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57786 RBAK RB associated KRAB zinc finger NM_001204456.2 99.8% 100% (many diffs)
2 human 57786 RBAK RB associated KRAB zinc finger NM_021163.4 99.8% 100% (many diffs)
3 human 100533952 RBAK-RBAKDN RBAK-RBAKDN readthrough NM_001204513.3 12.6% 11.4% (many diffs)
4 human 100289561 LOC100289561 uncharacterized LOC100289561 NM_001242713.3 12% 9.4% (many diffs)
5 human 100289561 LOC100289561 uncharacterized LOC100289561 NM_001347879.2 12% 9.4% (many diffs)
6 human 100289561 LOC100289561 uncharacterized LOC100289561 NM_001347880.2 12% 9.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2211
ORF length:
2142
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaacacattg caggggccag tgtcattcaa agatgtggct gtggatttca
121cccaggagga gtggcagcag ctggaccctg atgagaagat aacttacagg gatgtgatgt
181tggagaacta tagccatcta gtttctgtgg gatatgatac caccaagcca aacgtcatca
241ttaagttgga gcagggagag gagccgtgga taatgggagg tgaatttcca tgtcaacata
301gtccagaagc ctggagagtt gatgacctga tagagagaat ccaagaaaac gaagacaaac
361attcaaggca agctgcttgt atcaatagca aaaccctgac tgaagagaaa gagaatacat
421ttagtcaaat ttacatggaa acaagccttg ttccttcaag cataatagct cataattgtg
481tctcatgtgg aaagaattta gaatctattt cgcaattaat tagtagtgat ggaagctatg
541ctaggacaaa acctgatgag tgtaatgaat gtgggaaaac atatcatgga gagaaaatgt
601gtgaatttaa tcaaaatggg gatacctatt ctcacaatga agaaaatatt cttcagaaaa
661ttagtatttt ggagaaaccc tttgaatata atgaatgcat ggaagcctta gacaatgagg
721ctgtttttat tgctcataag agagcttaca taggggagaa gccctatgag tggaatgatt
781ctggaccaga cttcatacag atgtcaaatt ttaatgcata tcagagatca caaatggaaa
841tgaagccctt tgaatgcagt gaatgtggaa aatccttctg taaaaagtca aaattcatca
901tccaccagag ggctcacaca ggagagaaac cttatgaatg taatgtatgt gggaaatcct
961tcagccaaaa gggaaccctc actgtacatc ggagatcaca cttagaggag aagccctata
1021aatgtaatga atgtgggaaa accttttgtc agaagttaca cctcactcaa cacctaagaa
1081ctcattcagg agagaaaccc tacgaatgta gcgaatgtgg gaaaaccttc tgccaaaaga
1141cacatctcac cctgcaccag aggaatcatt caggagagag gccctatcca tgtaacgaat
1201gtgggaaatc cttctcccgc aagtctgctc tcagtgacca tcagagaact cacacaggag
1261agaagcttta taaatgtaat gaatgtggga aatcctacta ccgaaagtct actctgatta
1321cacatcagag aacacacaca ggagagaagc cctatcagtg tagcgagtgt gggaaattct
1381tttctcgggt gtcatacctc actatacatt atagaagtca tttagaagag aaaccctatg
1441aatgtaatga atgtggcaaa accttcaatt taaattcagc cttcattaga catcggaaag
1501tacacacaga agagaaatcc catgaatgta gtgaatgtgg aaagttctct cagttgtatc
1561tcaccgacca tcatacagct catttagaag agaaacccta tgaatgtaat gaatgtggga
1621aaaccttcct tgtaaattca gccttcgatg ggcaccagcc acttccaaaa ggggagaaat
1681cctatgaatg taatgtatgt ggaaagttat tcaatgagtt gtcatactat actgaacatt
1741atagaagtca ttcagaagag aaaccttatg gatgtagcga atgtgggaaa accttttccc
1801ataattcatc cctcttcaga catcaaagag tacacacagg cgagaaaccc tatgaatgtt
1861acgaatgtgg aaaattcttc tctcagaaat catatctcac tatacaTCAT CGAATTCATT
1921CAGGAGAGAA ACCCTATGAA TGTAGTAAAT GTGGAAAAGT CTTCTCTCGG ATGTCAAACC
1981TCACTGTCCA CTACAGAAGC CATTCAGGAG AGAAACCCTA TGAATGTAAT GAATGTGGGA
2041AAGTCTTTTC TCAGAAGTCA TACCTCACTG TACACTATAG AACTCATTCA GGAGAGAAAC
2101CCTATGAATG TAATGAGTGT GGGAAAAAAT TCCACCACAG ATCAGCCTTC AATAGCCATC
2161AGAGAATTCA TAGAAGAGGA AATATGAATG TACTTGATGT GGAAAATCTC TTGCCAACTT
2221TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
2281CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
2341CTTGTGGAAA GGACGACTCT GTTGAGCCCC AGAGCAGGAA ACGCGTTAAG TCgacaatca
2401acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)