Construct: ORF TRCN0000480740

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003015.5_s317c1
Derived from:
ccsbBroadEn_04308
DNA Barcode:
TCTGCGAACATCTCTTTCGATATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STK40 (83931)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480740
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83931 STK40 serine/threonine kinase 40 NM_001282547.2 100% 100%
2 human 83931 STK40 serine/threonine kinase 40 NM_032017.3 100% 100%
3 human 83931 STK40 serine/threonine kinase 40 NM_001282546.2 98.8% 98.8% 112_126del
4 mouse 74178 Stk40 serine/threonine kinase 40 NM_028800.3 89.8% 97.2% (many diffs)
5 mouse 74178 Stk40 serine/threonine kinase 40 XM_006503442.1 89.8% 97.2% (many diffs)
6 mouse 74178 Stk40 serine/threonine kinase 40 XM_017320414.1 89.8% 97.2% (many diffs)
7 mouse 74178 Stk40 serine/threonine kinase 40 NM_001145827.1 87% 94.2% (many diffs)
8 mouse 74178 Stk40 serine/threonine kinase 40 XM_006503441.3 87% 94.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1371
ORF length:
1305
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gcggagagca tcagacagag gagctgggga aacgtcggcc agggccaagg
121ctctaggaag tgggatttct ggaaataatg caaagagagc tggaccattc atccttggtc
181cccgtctggg caactcaccg gtgccaagca tagtgcagtg tttggcgagg aaagatggca
241cggatgactt ctatcagctg aagatcctga ccctggagga gaggggggac caaggcatag
301agagccagga agagcggcag ggcaagatgc tgctgcacac cgagtactca ctgctgtctc
361tcctgcacac gcaggatggc gtggtgcacc accacggcct cttccaggac cgcacctgtg
421aaatcgttga ggacacagaa tccagccgga tggttaagaa gatgaagaag cgcatctgcc
481tcgtcctgga ctgcctctgt gctcatgact tcagcgataa gaccgctgac ctcatcaacc
541tgcagcacta cgtcatcaag gagaagaggc tcagcgagag ggagactgtg gtaatcttct
601acgacgtggt ccgcgtggtg gaggccctgc accagaaaaa tatcgtgcac agagacctga
661agctggggaa catggtgctc aacaagagga cacatcggat aaccatcacc aacttctgcc
721tcgggaagca tctggtgagc gagggggacc tgctgaagga ccagagaggg agccctgcct
781acatcagtcc cgacgtgctc agcggccggc cgtaccgtgg caagcccagt gacatgtggg
841ccctgggcgt ggtgctcttc accatgctgt atggccagtt ccccttctac gacagcatcc
901cgcaggagct cttccgcaag atcaaggctg ccgagtatac cattcctgag gatggacggg
961tttctgagaa caccgtgtgt ctcaTCCGGA AGCTGCTGGT CCTTGACCCC CAGCAGCGCC
1021TGGCCGCCGC CGACGTCCTG GAGGCCCTCA GTGCCATCAT TGCATCATGG CAGTCCCTGT
1081CATCTCTGAG TGGGCCTTTG CAAGTGGTTC CTGACATTGA TGACCAAATG AGCAATGCGG
1141ATAGCTCCCA GGAGGCGAAG GTGACGGAGG AGTGCTCCCA GTACGAGTTT GAGAACTACA
1201TGCGTCAGCA GCTGCTGCTG GCCGAGGAGA AGAGCTCCAT CCATGACGCC CGGAGCTGGG
1261TACCCAAGCG GCAGTTCGGC AGCGCACCAC CGGTGCGACG GCTGGGCCAC GACGCACAGC
1321CCATGACCTC CTTGGACACG GCCATCCTGG CGCAGCGCTA CCTGCGGAAA TACCCAACTT
1381TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1441CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1501CTTGTGGAAA GGACGATCTG CGAACATCTC TTTCGATATC ACGCGTTAAG TCgacaatca
1561acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)