Construct: ORF TRCN0000480751

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016112.1_s317c1
Derived from:
ccsbBroadEn_01319
DNA Barcode:
CAGAGAATCGGCTTGTTTCGTGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSMD3 (5709)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480751
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5709 PSMD3 proteasome 26S subunit, non... NM_002809.4 100% 100%
2 mouse 22123 Psmd3 proteasome (prosome, macrop... NM_009439.1 89.4% 97.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1668
ORF length:
1602
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gcaggagggc tcggcgcggc gccgcggcgc ggacaaggcg aaaccgccgc
121ccggcggagg agaacaagaa cccccaccgc cgccggcccc ccaggatgtg gagatgaaag
181aggaggcagc gacgggtggc gggtcgacgg gggaggcaga cggcaagacg gcggcggcag
241cggctgagca ctcccagcga gagctggaca cagtcacctt ggaggacatc aaggagcacg
301tgaaacagct agagaaagcg gtttcaggca aggagccgag attcgtgctg cgggccctgc
361ggatgctgcc ttccacatca cgccgcctca accactatgt tctgtataag gctgtgcagg
421gcttcttcac ttcaaataat gccactcgag actttttgct ccccttcctg gaagagccca
481tggacacaga ggctgattta cagttccgtc cccgcacggg aaaagctgcg tcgacacccc
541tcctgcctga agtggaagcc tatctccaac tcctcgtggt catcttcatg atgaacagca
601agcgctacaa agaggcacag aagatctctg atgatctgat gcagaagatc agtactcaga
661accgccgggc cctagacctt gtagccgcaa agtgttacta ttatcacgcc cgggtctatg
721agttcctgga caagctggat gtggtgcgca gcttcttgca tgctcggctc cggacagcta
781cgcttcggca tgacgcagac gggcaggcca ccctgttgaa cctcctgctg cggaattacc
841tacactacag cttgtacgac caggctgaga agctggtgtc caagtctgtg ttcccagagc
901aggccaacaa caatgagtgg gccaggtacc tctactacac agggcgaatc aaagccatcc
961agctggagta ctcagaggcc cggagaacga tgaccaacgc ccttcgcaag gcccctcagc
1021acacagctgt cggcttcaaa cagacggtgc acaagcttct catcgtggtg gagctgttgc
1081tgggggagat ccctgaccgg ctgcagttcc gccagccctc cctcaagcgc tcactcatgc
1141cctatttcct tctgactcaa gctgtcagga caggaaacct agccaagttc aaccaggtcc
1201tggatcagtt tggggagaag tttcaagcag atgggaccta caccctaatt atccggctgc
1261ggcacaacgt gattaagaca ggtgtacgca tgatcagcct ctcctattcc cgaaTCTCCT
1321TGGCTGACAT CGCCCAGAAG CTGCAGTTGG ATAGCCCCGA AGATGCAGAG TTCATTGTTG
1381CCAAGGCCAT CCGGGATGGT GTCATTGAGG CCAGCATCAA CCACGAGAAG GGCTATGTCC
1441AATCCAAGGA GATGATTGAC ATCTATTCCA CCCGAGAGCC CCAGCTAGCC TTCCACCAGC
1501GCATCTCCTT CTGCCTAGAT ATCCACAACA TGTCTGTCAA GGCCATGAGG TTTCCTCCCA
1561AATCGTACAA CAAGGACTTG GAGTCTGCAG AGGAACGGCG TGAGCGAGAA CAGCAGGACT
1621TGGAGTTTGC CAAGGAGATG GCAGAAGATG ATGATGACAG CTTCCCTTGC CCAACTTTCT
1681TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1741CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1801GTGGAAAGGA CGACAGAGAA TCGGCTTGTT TCGTGACACG CGTTAAGTCg acaatcaacc
1861tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)

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